View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_high_19 (Length: 253)
Name: NF6872A_high_19
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 34571157 - 34570946
Alignment:
| Q |
20 |
gacatcagatcctcaatggaatggtttgtccttctgacttgccacttaattgctnnnnnnnttgtttcaatttgaatgtttatttacttatattctgtat |
119 |
Q |
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| T |
34571157 |
gacatcagatcctcaatggaatggtttgtccttctgacttgccacttaattgctaaaaaaattgtttcaatttgaatgtttctttacttatattctgtat |
34571058 |
T |
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| Q |
120 |
tggttttatatactaatatgcagagatattagagtttgatgctatggaagaaccaccatcagttttgtatgtggaagtttttgattttgacggtccattt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34571057 |
tggttttatatactaatatgcagagatattagagtttgatgctatggaagaaccaccatcagttttgtatgtggaagtttttgattttgacggtccattt |
34570958 |
T |
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| Q |
220 |
gaccaggatgtt |
231 |
Q |
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| T |
34570957 |
gaccaggatgtt |
34570946 |
T |
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