View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6872A_high_24 (Length: 233)
Name: NF6872A_high_24
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_high_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 16146488 - 16146565
Alignment:
| Q |
25 |
aatactctactacagcttcttcaccttctggacccctttgtccacctacaaacaaaagcttatctccaaaagtcttga |
102 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||| || |||||| |
|
|
| T |
16146488 |
aatacactactacagcttcttccccttccggaccactttgtccacctacaaacaacagcttatctccacaaatcttga |
16146565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 16146580 - 16146635
Alignment:
| Q |
178 |
ttcttgatcatgctatttaaacgttcaattgtgtacaaccaatcgttaagtacagc |
233 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||| |||| |||| |||||| |
|
|
| T |
16146580 |
ttcttgatcatgctagttaaacgttcaattgcttacaactaatcattaaatacagc |
16146635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 40119393 - 40119334
Alignment:
| Q |
43 |
cttcaccttctggacccctttgtccacctacaaacaaaagcttatctccaaaagtcttga |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||| ||||||||| ||| ||||| |
|
|
| T |
40119393 |
cttcaccttctggacccctttgtccacctacgaccaaaagtttatctccacaagccttga |
40119334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University