View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_1 (Length: 787)
Name: NF6872A_low_1
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_1 |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 644; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 22 - 787
Target Start/End: Original strand, 41983035 - 41983798
Alignment:
| Q |
22 |
atgcttttctttattcaaatacaaaatgattgctatgaggtgcttctctctctgcatgtaactaagatagaagataacatggacagatgtttggatcctc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41983035 |
atgcttttctttattcaaatacaaaatgattgctatgaggtgcttctctctctgcatgtaactaagatagaagataacatggacagatgtttggatcctc |
41983134 |
T |
|
| Q |
122 |
tacggccctactaaggctccaaggaaatctcagacgaaggattgatctgacgg-tttcgagatcaaaatttgattggttagattaatccaataagcgata |
220 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41983135 |
tacggccctactaaggctccaacaaaatctcagacgaaggattgatctgacgggtttcgagatcaaaatttgattggttagattaatccaataagcgaga |
41983234 |
T |
|
| Q |
221 |
ttaggcagaaaaaggtggaacgctaaagaggatccaagtcatgtaggtggtgcaattgatttataattgatagctttggtcctaaaattactacctacaa |
320 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41983235 |
ttaggcagaaaaagatggagcgctaaagaggatccaagtcatgtaggtggtgcaattgatttataattgatagctttggtcctaaaattactacctacaa |
41983334 |
T |
|
| Q |
321 |
gaactnnnnnnnnnnnnnnnnnctagaatcaaagattctcagaaatggtaaacttggcaggttcagtgggagagaaataaggtgccaaaacacatttatc |
420 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41983335 |
gaacttgatgatgatgatg---ctagaatcaaagactctcagaaatggtaaacttggcaggttcagtggaagagaaataaggtgccaaaacacatttatc |
41983431 |
T |
|
| Q |
421 |
agcaatcttctcaaaatattgcaagaagcacaatgactctctgagctgagtttttcaactcagcacatggtctcatatgctcaaca-cttatctcaaaag |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| || |||||||||| |
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| T |
41983432 |
agcaatcttctcaaaatattgcaagaagcacaatgactctctgagctgagtttttcaactcagca-atggtctcatatgcttaacaactgatctcaaaag |
41983530 |
T |
|
| Q |
520 |
caaattgttgctccaaggactcacatatttgttaattatatgactatttaagattcctaataattacatcaacaatatattttggccagattaatgtttc |
619 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41983531 |
caaattgttgctccaaggactcacatattggttaattatatgactatttaagattcctaataattacatcaacaatatattttggccagattaatgtttc |
41983630 |
T |
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| Q |
620 |
tgaaattaatatttttcaaatgttgggacaaactacactgttggtgaaatatctttttagtaccacgataagttatgcttatctaattaaattgagccct |
719 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41983631 |
tgaaattaatatttttcaaatgttgggacaaactacactgttggggaaatatctttttagtaccacgataagttatgcttatctaattaaattgagccct |
41983730 |
T |
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| Q |
720 |
cgtgaggtatgtgtttaacttaaaaatttgcatacttgtataatcaagttttttgtttggtacaaaat |
787 |
Q |
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| T |
41983731 |
cgtgaggtatgtgtttaacttaaaaatttgcatacttgtataatcaagttttttgtttggtacaaaat |
41983798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 621 - 698
Target Start/End: Original strand, 9455663 - 9455740
Alignment:
| Q |
621 |
gaaattaatatttttcaaatgttgggacaaactacactgttggtgaaatatctttttagtaccacgataagttatgct |
698 |
Q |
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|||| |||||||||||||||||||||||||| |||| |||||| ||| ||||| ||||||||| ||||| ||||||| |
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| T |
9455663 |
gaaaataatatttttcaaatgttgggacaaattacattgttggagaagcatcttcttagtaccatgataaattatgct |
9455740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 198; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 343 - 787
Target Start/End: Complemental strand, 44680945 - 44680507
Alignment:
| Q |
343 |
ctagaatcaaagattctcagaaatggtaaacttggcaggttcagtgggagagaaataaggtgccaaaacacatttatcagcaatcttctcaaaatattgc |
442 |
Q |
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|||||| |||||| ||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
44680945 |
ctagaaccaaagactcttagaaatggtaaacttggcaagttcagtgagagagaaataaggtgccaaaacacatttatcaacaatcttctcaaaatcttgc |
44680846 |
T |
|
| Q |
443 |
aagaagcacaatgactctctgagctgagtttttcaactcagcacatggtctcatatgctcaacacttatctcaaaagcaaattgttgctccaaggactca |
542 |
Q |
| |
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||| |||||| ||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
44680845 |
aagcagcacagtgactctatgagctgagtttttcaattcagcacatg--------------------atctcaaaagcaaattgttgctgcaaggactca |
44680766 |
T |
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| Q |
543 |
catatttgttaattatatgactatttaagattcctaataattacatcaacaatatattttggccagattaatgtttc------------tgaaattaata |
630 |
Q |
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|||||| ||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||||| ||| ||||||| |||||||||| |
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| T |
44680765 |
catattggttaattatataactatttaatattcctaataattacctcaacactatattttggccgcattgatgtttcatcaaggatagaagaaattaata |
44680666 |
T |
|
| Q |
631 |
tttttcaaatgttgggacaaactacactgttggtgaaatatctttttagtaccacgataagttatgcttatctaattaaattgagccctcgt--gaggta |
728 |
Q |
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||||||||||||||||||||| |||||||| || |||| ||||||||||||||| ||||||||| | ||| || ||||||||||||||| || ||| || |
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| T |
44680665 |
tttttcaaatgttgggacaaattacactgtcggggaaacatctttttagtaccatgataagttaagtttacctgattaaattgagccctggtgagagtta |
44680566 |
T |
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| Q |
729 |
tgtgtttaacttaaaaatttgcatacttgtataatcaagttttttgtttggtacaaaat |
787 |
Q |
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||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44680565 |
tgtgtctaactcaaaaataagcatacttgtataatcaagttttttgtttggtacaaaat |
44680507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 344 - 581
Target Start/End: Complemental strand, 13171768 - 13171532
Alignment:
| Q |
344 |
tagaatcaaagattctcagaaatggtaaacttggcaggttcagtgggagagaaataaggtgccaaaacacatttatcagcaatcttctcaaaatattgca |
443 |
Q |
| |
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||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||| |
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| T |
13171768 |
tagaaccaaagactcccagaaatggtaaacttggcaggttcagtgggagagaaataaggtgtcaaaacacattcatcaccaatcttctcaaaatattgca |
13171669 |
T |
|
| Q |
444 |
agaagcacaatgactctctgagctgagtttttcaactcagcacatggtctcatatgctcaacacttatctcaaaagcaaattgttgctccaaggactcac |
543 |
Q |
| |
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|| |||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
13171668 |
agcagcagaatgactctctaagctgattttttcaactcagcacatggtctcatatgctcaacactgatctc-gaagcaaattgttgctccaaggactcac |
13171570 |
T |
|
| Q |
544 |
atatttgttaattatatgactatttaagattcctaata |
581 |
Q |
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||||| ||||||||||||||||| |||||||||||||| |
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| T |
13171569 |
atattggttaattatatgactatataagattcctaata |
13171532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 554 - 787
Target Start/End: Complemental strand, 44690019 - 44689770
Alignment:
| Q |
554 |
attatatgactatttaagattcctaataattacatcaacaatatattttggccagattaatgtttct------------gaaattaatatttttcaaatg |
641 |
Q |
| |
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||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||| |||| ||||||| ||||||||||||||||||||| |
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| T |
44690019 |
attatataactatttaatatttctaataattacctcaacaatatattttggccggattgatgtttcatcagggatagaagaaattaatatttttcaaatg |
44689920 |
T |
|
| Q |
642 |
ttgggacaaactacactgttggtgaaatatctttttagtaccacgataagttatgcttatctaattaaattgagccctcgt--gaggtatgtgtttaact |
739 |
Q |
| |
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|||||||||| |||||||| || |||| ||||||||||||||| ||||||||| | ||| || |||||| ||| |||| || ||||||| ||| ||||| |
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| T |
44689919 |
ttgggacaaattacactgtcggggaaacatctttttagtaccatgataagttaagtttacctgattaaactgatcccttgtgagaggtatatgtctaact |
44689820 |
T |
|
| Q |
740 |
--taaaaatttgcatacttgtataatcaagttttttgtttggtacaaaat |
787 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
44689819 |
caaaaaaattagcatacttgtataatcatcttttttgtttggtacaaaat |
44689770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 362 - 515
Target Start/End: Complemental strand, 44691685 - 44691529
Alignment:
| Q |
362 |
gaaatggtaaacttggcaggttcagtgggagagaaataaggtgccaaaacacatttatcagca---atcttctcaaaatattgcaagaagcacaatgact |
458 |
Q |
| |
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||||| |||||||||| ||||||||| | |||||||||||||||||||||||||||||| || ||||||||||||| ||||||| | ||||| |||| |
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| T |
44691685 |
gaaatagtaaacttggtgggttcagtgagtgagaaataaggtgccaaaacacatttatcaccaccaatcttctcaaaatcttgcaagcatcacaacgact |
44691586 |
T |
|
| Q |
459 |
ctctgagctgagtttttcaactcagcacatggtctcatatgctcaacacttatctca |
515 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||||||||| ||| | |||||| |
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| T |
44691585 |
ctctgagctgagtttgtctactcagcacatggtttcatatgctcgacattgatctca |
44691529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 13171855 - 13171811
Alignment:
| Q |
260 |
catgtaggtggtgcaattgatttataattgatagctttggtccta |
304 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13171855 |
catgtaggtggtgcaattgatttataattgatagccttggtccta |
13171811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 364 - 424
Target Start/End: Original strand, 22428057 - 22428117
Alignment:
| Q |
364 |
aatggtaaacttggcaggttcagtgggagagaaataaggtgccaaaacacatttatcagca |
424 |
Q |
| |
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|||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| |
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| T |
22428057 |
aatggtaaacttggcagggtcagtaggaggaaaataaggtgccaaaacacatttatcagca |
22428117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 366 - 459
Target Start/End: Complemental strand, 39790384 - 39790287
Alignment:
| Q |
366 |
tggtaaacttggcaggttcagtgggagagaaataaggtgccaaaacacatttatcagca----atcttctcaaaatattgcaagaagcacaatgactc |
459 |
Q |
| |
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||||||| |||| |||||| ||||||| |||||||||||||||||||||||| |||||| |||||| ||||| ||||||| ||||||| ||||| |
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| T |
39790384 |
tggtaaatttggaaggttccgtgggagggaaataaggtgccaaaacacatttctcagcacatcttcttcttaaaatcttgcaagcagcacaaggactc |
39790287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 621 - 760
Target Start/End: Original strand, 233747 - 233886
Alignment:
| Q |
621 |
gaaattaatatttttcaaatgttgggacaaactacactgttggtgaaatatctttttagtaccacgataagttatgcttatctaattaaattgagccctc |
720 |
Q |
| |
|
||||||||||||||| ||||||| || ||| || | |||||| ||| ||||| |||||| || ||||||||||||||||| ||||||| ||||| ||| |
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| T |
233747 |
gaaattaatatttttaaaatgttagggtaaattaaattgttggggaagcatcttcttagtagcaagataagttatgcttatccaattaaactgagctctc |
233846 |
T |
|
| Q |
721 |
gtgaggtatgtgtttaacttaaaaatttgcatacttgtat |
760 |
Q |
| |
|
|||| |||| || ||||| | ||| | || ||||||||| |
|
|
| T |
233847 |
atgagttatgagtgtaactcagaaactagcctacttgtat |
233886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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