View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_10 (Length: 468)
Name: NF6872A_low_10
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 38566857 - 38567284
Alignment:
| Q |
19 |
atcttatttattcaatcgttgcgccatctttaccgtatgaaatgttatccttaatgctggatgcaaacaacactggctcctggctaaccataccaatttt |
118 |
Q |
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||||||| | |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
38566857 |
atcttatctcttcaatcgttgctccatctttaccatatgaaatgttatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaatttt |
38566956 |
T |
|
| Q |
119 |
acctctgatacacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataatt |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38566957 |
ccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaactgataatt |
38567056 |
T |
|
| Q |
219 |
gtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567057 |
gtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccg |
38567156 |
T |
|
| Q |
319 |
gataactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567157 |
gataactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaat |
38567256 |
T |
|
| Q |
419 |
tgtctcaaacattttgtaagccgccgcc |
446 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
38567257 |
tgtctcaaacattttgtaagccgccgcc |
38567284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 449
Target Start/End: Original strand, 38525732 - 38526162
Alignment:
| Q |
19 |
atcttatttattcaatcgttgcgccatctttaccgtatgaaatgttatccttaatgctggatgcaaacaacactggctcctggctaaccataccaatttt |
118 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| || | ||||||||| |
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|
| T |
38525732 |
atcttatttcttcaattgttgctccatctttaccatatgcaatgttatccttaatgctggatgcaaataacactggctcctggctgacaagaccaatttt |
38525831 |
T |
|
| Q |
119 |
acctctgatacacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataatt |
218 |
Q |
| |
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|||||||| ||||| | ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| | |||| | |
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| T |
38525832 |
ccctctgatccacctaagctgaagttctttcatgttaattccatcgataagtacttcaccggcctgtggatcatagaatctttctaccaaactaataact |
38525931 |
T |
|
| Q |
219 |
gtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccg |
318 |
Q |
| |
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|| |||||||||||||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38525932 |
gtggactttccacttccactttgtccaaccaatgccgcggttgttccgcttgatatatgaagagagaatccattgaatatcagctcctcaggtcttgccg |
38526031 |
T |
|
| Q |
319 |
gataactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaat |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38526032 |
gataactgaaataaacttctttcaactctatctcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaat |
38526131 |
T |
|
| Q |
419 |
tgtctcaaacattttgtaagccgccgcctga |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
38526132 |
tgtctcaaacattttgtaagccgccgcctga |
38526162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 51199554 - 51199472
Alignment:
| Q |
168 |
agaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaa |
250 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||| |||| ||| || ||| || |||||||| |||||||| || ||||| |
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| T |
51199554 |
agaacttcaccagcctgtggatcataaaatctctctatcaaactgacaactgtggattttccactcccactttgccctaccaa |
51199472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 51145548 - 51145408
Alignment:
| Q |
185 |
tggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatg-aagaga |
283 |
Q |
| |
|
|||||||||||||||||||| |||| | | || ||| || || |||||||||||||| || ||||| |||| || || ||||| |||| ||| |||||| |
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| T |
51145548 |
tggatcatagaatctctctatcaaactaacaactgtggatttcccacttccactttgccctaccaaagctgcagtagtgccgcttggta-atgaaagaga |
51145450 |
T |
|
| Q |
284 |
gaatccattaaatatcagctcctcaggtcttgccggataact |
325 |
Q |
| |
|
|||||||| |||||||| || || ||||||| |||||||| |
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| T |
51145449 |
aaatccattgaatatcagttcatctggtcttgtaggataact |
51145408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 51156689 - 51156549
Alignment:
| Q |
185 |
tggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatg-aagaga |
283 |
Q |
| |
|
|||||||||||||||||||| |||| | | || ||| || || |||||||||||||| || ||||| |||| || || ||||| |||| ||| |||||| |
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| T |
51156689 |
tggatcatagaatctctctatcaaactaacaactgtggatttcccacttccactttgccctaccaaagctgcagtagtgccgcttggta-atgaaagaga |
51156591 |
T |
|
| Q |
284 |
gaatccattaaatatcagctcctcaggtcttgccggataact |
325 |
Q |
| |
|
|||||||| |||||||| || || ||||||| |||||||| |
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|
| T |
51156590 |
aaatccattgaatatcagttcatctggtcttgtaggataact |
51156549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 51212687 - 51212627
Alignment:
| Q |
181 |
cctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttg |
241 |
Q |
| |
|
||||||||||||| |||||||||| |||||| || | ||| || |||||||| |||||||| |
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| T |
51212687 |
cctgtggatcataaaatctctctatcaaatttatcactgttgattttccactcccactttg |
51212627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 49737314 - 49737396
Alignment:
| Q |
168 |
agaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaa |
250 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||||||| |||| | |||| ||||| || ||||| ||||||||||| ||||| |
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|
| T |
49737314 |
agaatttcaccaccctgtggatcataaaatctctctatcaaactaataaccgtcgatttcccactcccactttgtcctaccaa |
49737396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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