View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_105 (Length: 299)
Name: NF6872A_low_105
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_105 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 21832015 - 21831747
Alignment:
| Q |
7 |
atactaataggatgcataatttcatgataatcagcattcgtctcttacatcaaatatggtatcaacaaaacaagttcatcttatagagatctcatcaacc |
106 |
Q |
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| T |
21832015 |
atactaataggatgcataatttcatgataatcagcattcgtctcttacaccaaatatggtatcaacaaaacaagttcatcttatagagatctcatcaacc |
21831916 |
T |
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| Q |
107 |
acatggagttcgaacttgaaataacctgaaaatacatttaaaataagcnnnnnnnnnnnnnnnnnctttgtagaccgataaaaacatcaatgaggacatt |
206 |
Q |
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| T |
21831915 |
acatggagttcgaacttgaaataacctgaaaatacatttaaaataagc----aaaaaaaaaaaaactttgtagaccgataaaaacatcaatgaggacatt |
21831820 |
T |
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| Q |
207 |
agatctcaaacatggtattaatggagtgatcaaataccacgatcgctttcgaggagggcacttggataccaag |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21831819 |
agatctcaaacatggtattaatggagtgatcaaataccacgatggctttcgaggagggcacttggataccaag |
21831747 |
T |
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