View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_110 (Length: 295)
Name: NF6872A_low_110
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_110 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 22 - 295
Target Start/End: Original strand, 26668968 - 26669241
Alignment:
| Q |
22 |
attctttgaccctttcaagcgttggttttgaaagtgaaattgagccaaagattacaagtgaagaaaacaaggttaagccgttaggtttatcttcttctga |
121 |
Q |
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| T |
26668968 |
attctttgaccctttcaagcgttggttttgaaagtgaaattgagccaaagattacaagtgaagaaaacaaggttaagccgttaggtttatcttcttctga |
26669067 |
T |
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| Q |
122 |
gggtttcaaggtgaaaagaaaaccctttggaattagtgagaagaaaagtgttagggttaaagagagaaaagaaatagagaatgccccttttgctgctaag |
221 |
Q |
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| T |
26669068 |
gggtttcaaggtgaaaagaaaaccctttggaattagtgagaagaaaagtgttaggattaaagagagaaaagaaatagagaatgccccttttgctgctaag |
26669167 |
T |
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| Q |
222 |
tctttttcggaactcggtattccggaagtgttgattgagaggttaggaaaagagggttttaatgttccgactga |
295 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26669168 |
tcgttttcggaactcggtattccggaagtgttgattgagaggttaggaaaagagggttttaatgttccgactga |
26669241 |
T |
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