View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6872A_low_117 (Length: 291)

Name: NF6872A_low_117

Description: NF6872A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6872A_low_117

[»] chr4 (2 HSPs)

Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 170; E-Value: 3e-91

Query Start/End: Original strand, 18 - 191

Target Start/End: Original strand, 47361962 - 47362135

Alignment:

Q	18	catcaagccgcaacaacttcggatcctcagatctaaaccccaacggcctcctcgcattcccttccggcagttcaatctccatcgtcgacacacggtcaat	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	47361962	catcaagccgcaacaacttcggatcctcagatctaaaccccaacggcctcctcgcattcccttccggcagttcaatctccatcgtcgacacacggtcaat	47362061	T

Q	118	gcaacttctctctgctttccccatccctccaccaccgtcctccgctgcaccgttcgtaacctctgttcgctgga	191	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	47362062	gcaacttctctctgctttccccatccctccaccaccgtcctccgctgcaccgttcgtaacctccgttcgctgga	47362135	T

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Target: chr4; HSP #2

Raw Score: 38; E-Value: 0.000000000002

Query Start/End: Original strand, 254 - 291

Target Start/End: Original strand, 47362198 - 47362235

Alignment:

Q	254	gccgccggcgatcgtcaaggtcgcattgctcttcttga	291	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	47362198	gccgccggcgatcgtcaaggtcgcattgctcttcttga	47362235	T

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