View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_118 (Length: 291)
Name: NF6872A_low_118
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_118 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 285
Target Start/End: Complemental strand, 1702342 - 1702066
Alignment:
| Q |
9 |
agcagagatatccaaagactccaagattaagataattaggagtggaaccaaacagaatttcattaggacatttgtttttaagatgtgttgttgtcatgcg |
108 |
Q |
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| T |
1702342 |
agcacagacatccaaagactcgaagattaagataattaggagtggaaccaaacagaatttcatgaggacatttgtttttaagatgtgttgttggcatgcg |
1702243 |
T |
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| Q |
109 |
atttattaaatacaccgccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgg |
208 |
Q |
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| T |
1702242 |
atttattaaatacaccgccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacga |
1702143 |
T |
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| Q |
209 |
tgtttgcgttctgcaataccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaag |
285 |
Q |
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| T |
1702142 |
tgtttgcgttctgcaataccaatatgttcgggagtgtacggtgggctgatatagtgagatataccatgagagttaag |
1702066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 125 - 255
Target Start/End: Complemental strand, 5400962 - 5400832
Alignment:
| Q |
125 |
gccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacggtgtttgcgttctgcaa |
224 |
Q |
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| T |
5400962 |
gccatttgaaaagcataacaccagaatgtttgaggtacagaagagtgagagagaagtgtgagagcagtttctactatatggcggtgtttgcgttcagcaa |
5400863 |
T |
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| Q |
225 |
taccaatatgttcgggagtgtacggtgggct |
255 |
Q |
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| T |
5400862 |
tgccaatgtgttcaggagtataaggtgggct |
5400832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 125 - 255
Target Start/End: Complemental strand, 3541937 - 3541807
Alignment:
| Q |
125 |
gccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacggtgtttgcgttctgcaa |
224 |
Q |
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| T |
3541937 |
gccatttgaaaagcataacaccagaatgtttgaggtacagaagagtgagagagaagtgtgagagcagtttctactatatggcggtgtttgcgttcagcaa |
3541838 |
T |
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| Q |
225 |
taccaatatgttcgggagtgtacggtgggct |
255 |
Q |
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| T |
3541837 |
tgccaatgtgttcaggagtataaggtgggct |
3541807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 26592278 - 26592339
Alignment:
| Q |
191 |
gtttctactatatgacggtgtttgcgttctgcaataccaatatgttcgggagtgtacggtgg |
252 |
Q |
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| T |
26592278 |
gtttcgactatatggcaatgtttgcgttctgcaatgccaatatgttcaggagtgtaaggtgg |
26592339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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