View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6872A_low_124 (Length: 287)

Name: NF6872A_low_124
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6872A_low_124
NF6872A_low_124
[»] chr5 (2 HSPs)
chr5 (9-281)||(29013495-29013767)
chr5 (9-281)||(29366183-29366455)


Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 281
Target Start/End: Original strand, 29013495 - 29013767
Alignment:
Q  9 gagatgaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatca 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29013495 gagaagaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatca 29013594  T
Q  109 gagttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29013595 gagttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaac 29013694  T
Q  209 caatagcataccattgacgtttccacagtgaatgtgatgctcttactccacgagctgatattatgcatatttc 281  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29013695 caatagcataccattgacgtttccatagtgaatgtgatgctcttactccacgagctgatattatgcatatttc 29013767  T

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Target: chr5; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 9 - 281
Target Start/End: Original strand, 29366183 - 29366455
Alignment:
Q  9 gagatgaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatca 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29366183 gagaagaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatca 29366282  T
Q  109 gagttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29366283 gagttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaac 29366382  T
Q  209 caatagcataccattgacgtttccacagtgaatgtgatgctcttactccacgagctgatattatgcatatttc 281  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||    
T  29366383 caatagcataccattgacgtttccatagtgaatgtgatgctcttactcctcgagctgatattaagcatatttc 29366455  T

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