View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_129 (Length: 285)
Name: NF6872A_low_129
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_129 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 178 - 285
Target Start/End: Original strand, 6976585 - 6976692
Alignment:
| Q |
178 |
atgtaggttggatatcgtcatatagattgtgctcaatattatggcaatgaaaaggaggtgaggtgttatgtatcattagtcctatcaatgtcaatatcgt |
277 |
Q |
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| T |
6976585 |
atgtaggttggatatcgtcatatagattgtgctcaatattatggcaatgaaaaggaggtgaggtgttatgtatcattagtcctatcaatgtcaatatcgt |
6976684 |
T |
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| Q |
278 |
gtctgatg |
285 |
Q |
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| T |
6976685 |
gtctgatg |
6976692 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 6957129 - 6957183
Alignment:
| Q |
182 |
aggttggatatcgtcatatagattgtgctcaatattatggcaatgaaaaggaggt |
236 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6957129 |
aggttggttatcgtcatatagattgtgctcaaatttatggcaatgaaaaggaggt |
6957183 |
T |
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