View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_13 (Length: 453)
Name: NF6872A_low_13
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 21 - 447
Target Start/End: Original strand, 33102087 - 33102513
Alignment:
| Q |
21 |
atgccatgaactataggttcatcgcagctgatacacttcaaaaaatcatcatgctccttgcacttacaatttggactaatttcacagctaatggtagctt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102087 |
atgccatgaactataggttcatcgcagctgatacacttcaaaaaatcatcatgctccttgcacttacaatttggactaatttcacagctaatggtagctt |
33102186 |
T |
|
| Q |
121 |
agagtggatgatcacaatcttctctctttcaacattacccaacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102187 |
agagtggatgatcacaatcttctctctttcaacattacccaacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacc |
33102286 |
T |
|
| Q |
221 |
cttatggttcaagttgtggttcttcagtgtatcatttggtccactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagt |
320 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102287 |
cttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagt |
33102386 |
T |
|
| Q |
321 |
ttcctgaaactgctgcttctattatttcctttaaggttgattctgagtttgtttctcttgatgggagagattttcgtgagacagatgctgaggttggtta |
420 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
33102387 |
ttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttctcttgatgggagagattttcttgagacagatgctgaggttggtga |
33102486 |
T |
|
| Q |
421 |
tgatggtaagcttcatgttcatctcag |
447 |
Q |
| |
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|||||||||||||||||||||| |||| |
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| T |
33102487 |
tgatggtaagcttcatgttcatgtcag |
33102513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 379
Target Start/End: Original strand, 52716522 - 52716731
Alignment:
| Q |
170 |
gttatgggaattccacttctcatagctatgtatggtgaatattccggtacccttatggttcaagttgtggttcttcagtgtatcatttggtccactttgt |
269 |
Q |
| |
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||||||||||| || ||| | | ||||||||||||||| | || || | |||||||| ||| |||| |||||||| || | ||||||| |||| | |
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|
| T |
52716522 |
gttatgggaatccctcttttaagagctatgtatggtgatttctcaggaaatcttatggtacaaattgttgttcttcaaagtgttatttggtacactctta |
52716621 |
T |
|
| Q |
270 |
tattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgagtt |
369 |
Q |
| |
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| |||||| | ||||| ||| | | |||||| ||||| || | |||||||||||||||||||| |||||||| | || || || ||||||||||| | |
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| T |
52716622 |
tgttgtttttgtttgaatatagagctgctaaacttcttataacagaacagtttcctgaaactgcagcttctataacatcattcaaagttgattctgacgt |
52716721 |
T |
|
| Q |
370 |
tgtttctctt |
379 |
Q |
| |
|
|||||||||| |
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|
| T |
52716722 |
tgtttctctt |
52716731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 26 - 363
Target Start/End: Complemental strand, 10838990 - 10838653
Alignment:
| Q |
26 |
atgaactataggttcatcgcagctgatacacttcaaaaaatcatcatgctccttgcacttacaatttggactaatttcacagctaatggtagcttagagt |
125 |
Q |
| |
|
||||||| |||||||| || || || ||||||||||||||||||||||| | |||||| || | ||||| ||||| ||||| | ||||| | |
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|
| T |
10838990 |
atgaacttcaggttcatagctgcagacacacttcaaaaaatcatcatgctagtagcactttcattatggacattgttcactaaaaatggcaatttagaat |
10838891 |
T |
|
| Q |
126 |
ggatgatcacaatcttctctctttcaacattacccaacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacccttat |
225 |
Q |
| |
|
||||||| |||||||| || | |||||| | || ||||||||||||||||||||||| | | || |||||||||||||| ||||| |||| | | || |
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|
| T |
10838890 |
ggatgataacaatcttttcattatcaacacttcctaacactttggttatgggaattcctttgttaattgctatgtatggtgattattcaggtagcttaat |
10838791 |
T |
|
| Q |
226 |
ggttcaagttgtggttcttcagtgtatcatttggtccactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagtttcct |
325 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||| | || | |||||||||||||| ||||||||||||||| |||| ||||| |||||||| |
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| T |
10838790 |
ggttcaagttgtggttcttcagtgtattatttggtacactcttttgctttttctttttgagtaccgtggtgctaagcttttaatcatggagcagtttcca |
10838691 |
T |
|
| Q |
326 |
gaaactgctgcttctattatttcctttaaggttgattc |
363 |
Q |
| |
|
||||| || ||||| || ||||||||||||| ||||| |
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| T |
10838690 |
gaaaccgcggcttccatcgtttcctttaaggtcgattc |
10838653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 197 - 366
Target Start/End: Original strand, 34971055 - 34971224
Alignment:
| Q |
197 |
atgtatggtgaatattccggtacccttatggttcaagttgtggttcttcagtgtatcatttggtccactttgttattgtttctttttgagtatcgtggtg |
296 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||| | || |||||||| ||||||||||||| || ||| | |||||| | ||||||||| | |||| |
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| T |
34971055 |
atgtatggtgatgattctggtacccttatggttcaaatagttgttcttcaatgtatcatttggtatacattgatgttgtttttgtttgagtataggggtg |
34971154 |
T |
|
| Q |
297 |
ctaagcttctaattatggaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctga |
366 |
Q |
| |
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||| | |||| ||| | |||||||||||||| ||||||| ||||||||| || || || ||||||||||| |
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| T |
34971155 |
ctaggattctcattgttgaacagtttcctgatactgctggttctattatatcattcaaagttgattctga |
34971224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 260
Target Start/End: Original strand, 25038852 - 25038951
Alignment:
| Q |
161 |
aacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacccttatggttcaagttgtggttcttcagtgtatcatttggt |
260 |
Q |
| |
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||||||||||||||||||||||| | || | || ||||||||||||| ||| |||| | ||||| ||| |||| |||||||| ||||||||||||| |
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| T |
25038852 |
aacactttggttatgggaattcctttacttaaaggaatgtatggtgaattttcaggtagtttaatggtacaaattgttgttcttcaatgtatcatttggt |
25038951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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