View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6872A_low_132 (Length: 282)

Name: NF6872A_low_132
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6872A_low_132
NF6872A_low_132
[»] chr4 (1 HSPs)
chr4 (1-282)||(56526238-56526519)


Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 56526519 - 56526238
Alignment:
Q  1 tcttcagtgaaggcaattaaatgatcatgaaaacatgttaacaataggttgtagagtcgatgagacacatttcgcaccaatcgtctgtcacgaactgtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56526519 tcttcagtgaaggcaattaaatgatcatgaaaacatgttaacaataggttgtagagtcgatgagacacatttcgcaccaatcgtctgtcacgaactgtga 56526420  T
Q  101 tcctgcaggataccaatatctttagtgaaggtaattaaacaatcatgaaaacaggttaacagacttatagatggtaaattaaatggacaccttgcgacac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  56526419 tcctgcaggataccaatatctttagtgaaggtaattaaacaatcatgaaaacaggttaacagacttatagatggtaaattaaagggacaccttgcgacac 56526320  T
Q  201 aaatgacaaaatcaactgatagggaagagagggggcaggttgtttcaatcccttgggattgggtttgggcaccattagctag 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56526319 aaatgacaaaatcaactgatagggaagagagggggcaggttgtttcaatcccttgggattgggtttgggcaccattagctag 56526238  T

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