View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_133 (Length: 280)
Name: NF6872A_low_133
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_133 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 2957336 - 2957595
Alignment:
| Q |
12 |
atgaaccaaattaaggtccgacaattcctctaatatgattatatattgtagagaaagtttatggaaaacatcaatnnnnnnntatgatagaagaagtgat |
111 |
Q |
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| T |
2957336 |
atgaaccaaattaaggttcgacaattcctctaatatgattatatattgcagagaaagtttatggaaaacatcaatgaaaaaatatgatagaagaagtaat |
2957435 |
T |
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| Q |
112 |
a--atattaannnnnnnnnagtaaatatcaactttatatatactatatagtatttgggttgagtttaactcaagttttataaaacatataacttgtgagg |
209 |
Q |
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| T |
2957436 |
ataatattaatttttttt-agtaaatatcaactttatatatactatataatat--gggttgagtttaactcaagttttataaatcata--acttgtgagg |
2957530 |
T |
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| Q |
210 |
tgagcacctgtatccacttctaaacacattattaagatatatctcatttaatatggagtttttaa |
274 |
Q |
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| T |
2957531 |
tgagcacctatatccacttctaaacacattatcaagatatatctcatttaatatggagtttttaa |
2957595 |
T |
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