View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_138 (Length: 276)
Name: NF6872A_low_138
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_138 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 27774801 - 27775064
Alignment:
| Q |
1 |
acatcatgtactttctcaggtaagcaaacgggaagggagtcatccctcagcatctgcaatataaaaatcaatgtaaggaaaaatatcttagagtagatgc |
100 |
Q |
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| T |
27774801 |
acatcatgtactttctcaggtaagcaaacaggaagggagtcatccctcagcatctgcaatataaaaatcaatgtaaggaaaaatatcttagagtagatgc |
27774900 |
T |
|
| Q |
101 |
aaatgttataatttgtagtaaaaaacaacaatagcatgtctgtttgatataattgaaaacaaagaagataaacaacagccgtagttatcctggtggttgg |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27774901 |
aaatgttatcatttgtagtaaaaaacaacaatagcatgtctgtttgatataattgaaaacaaagaagataaacaacagccgtagttatcctggtggttgg |
27775000 |
T |
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| Q |
201 |
aaaatcaagatgtattctaaatttaacatgtcaaaagataaaaatgtaaaagataaatgatgtc |
264 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27775001 |
aaaataaagatgtattctaaatttaacatgtcaaaagataaaaatgtaaaagataaatgatgtc |
27775064 |
T |
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