View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_14 (Length: 445)
Name: NF6872A_low_14
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_14 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 428
Target Start/End: Complemental strand, 43268596 - 43268185
Alignment:
| Q |
17 |
catcagctccatatggagagtattggaggcagttaaggagcatatgtgtgttacatcttcttagtgctaaaagcgttcgatcttttcgcgctgtaagaga |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43268596 |
catcagctccatatggagagtattggaggcagttaaggagcatatgtgtgttacatcttcttagtgctaaaagcgttcgttcttttcgcgctgtaagaga |
43268497 |
T |
|
| Q |
117 |
ggaagaaacgggtttaatgatggagaaaataaagcactgttcttcttccacttcattaccagtgaatttaagtgaattgatggcaacaactacgaatgat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
43268496 |
ggaagaaacgggtttaatgatggagaaaataaagcactgttcttcttccacttcattaccagcgaatttaagtgaattaatggcaacaactacgaatgat |
43268397 |
T |
|
| Q |
217 |
atagtttgtaaggttgttttgggaagaaagtatagtggtgaaaatgggaagggattttcaaagttattgatggattttactgagttacttggtgcttttg |
316 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43268396 |
atagtttgtagggttgttttgggaagaaagtatagtggtgaaaatgggaagggattttcaaagttattgatggattttactgagttacttggtgcttttg |
43268297 |
T |
|
| Q |
317 |
ttgttggggactatgttccttggcttgattggttcagccatctttcaggatattatgcaagagcaaaaaaggtggctaaacaatttgatgatcttttgga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43268296 |
ttgttggggactatgttccttggcttgattggttcagccatctttcaggatattatgcaagagcaaaaaaggtggctaaacaatttgatgatcttttgga |
43268197 |
T |
|
| Q |
417 |
gggtgttgttga |
428 |
Q |
| |
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|||||||||||| |
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| T |
43268196 |
gggtgttgttga |
43268185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 20 - 428
Target Start/End: Complemental strand, 43311181 - 43310776
Alignment:
| Q |
20 |
cagctccatatggagagtattggaggcagttaaggagcatatgtgtgttacatcttcttagtgctaaaagcgttcgatcttttcgcgctgtaagagagga |
119 |
Q |
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|||||||||||||||| |||||||| ||| |||| ||||| | || ||||||||||| ||||||||||| |||| |||| || || |||| |||||||| |
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| T |
43311181 |
cagctccatatggagaatattggagacagataagaagcatttcagttttacatcttctcagtgctaaaagagttcaatctcttagcactgtgagagagga |
43311082 |
T |
|
| Q |
120 |
agaaacgggtttaatgatggagaaaataaagcactgttcttcttccacttcattaccagtgaatttaagtgaattgatggcaacaactacgaatgatata |
219 |
Q |
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||||| ||||||||||||||||||||||| || |||| ||| ||| || ||||| |||||| ||||||| || | | ||||||| ||||||||| |
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| T |
43311081 |
agaaattggtttaatgatggagaaaataaaccattgttgttc---cacatctttacccgtgaatataagtgatttactctccacaactatcaatgatata |
43310985 |
T |
|
| Q |
220 |
gtttgtaaggttgttttgggaagaaagtatagtggtgaaaatgggaagggattttcaaagttattgatggattttactgagttacttggtgcttttgttg |
319 |
Q |
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||||||| ||||| |||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
43310984 |
gtttgtagggttgctttggggagaaagtatagtggtgaaagtgggaagggatttaaaaagttattattggattttactgagttacttggtacttttgttg |
43310885 |
T |
|
| Q |
320 |
ttggggactatgttccttggcttgattggttcagccatctttcaggatattatgcaagagcaaaaaaggtggctaaacaatttgatgatcttttggaggg |
419 |
Q |
| |
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|||| |||||||||||||||||||||||| | | | || |||| |||| |||||||||||||||||| || |||||||| ||||||||||||||||||| |
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| T |
43310884 |
ttggtgactatgttccttggcttgattggatgaccaatgtttctggattttatgcaagagcaaaaaaagttgctaaacagtttgatgatcttttggagga |
43310785 |
T |
|
| Q |
420 |
tgttgttga |
428 |
Q |
| |
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||| ||||| |
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| T |
43310784 |
tgtagttga |
43310776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 416
Target Start/End: Complemental strand, 43275480 - 43275087
Alignment:
| Q |
20 |
cagctccatatggagagtattggaggcagttaaggagcatatgtgtgttacatcttcttagtgctaaaagcgttcgatcttttcgcgctgtaagagagga |
119 |
Q |
| |
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|||||||||||||||| |||||||| ||| ||| ||| |||| || ||||||||||| ||||||||||| |||| |||| |||| || || |||||||| |
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| T |
43275480 |
cagctccatatggagaatattggagacagataaagagtatatcagttttacatcttctcagtgctaaaagagttcaatctcttcgtgccgtgagagagga |
43275381 |
T |
|
| Q |
120 |
agaaacgggtttaatgatggagaaaataaagcactgttcttcttccacttcattaccagtgaatttaagtgaattgatggcaacaactacgaatgatata |
219 |
Q |
| |
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|||| |||||||||||||||||||||||||||| ||||||| | |||||||| |||||| |||||||||| | | || ||| ||||||||| |
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| T |
43275380 |
agaagtaggtttaatgatggagaaaataaagcactattcttct---aaatcattacctgtgaatataagtgaattagcctccaaaattactaatgatata |
43275284 |
T |
|
| Q |
220 |
gtttgtaaggttgttttgggaagaaagtatagtggtgaaaatgggaagggattttcaaagttattgatggattttactgagttacttggtgcttttgttg |
319 |
Q |
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||||||| ||||| ||| |||||||| ||| |||||||| ||| ||||||||| ||||| |||| ||| |||| |||| |||| |||||||| ||| |
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| T |
43275283 |
gtttgtagggttgctttaggaagaaaatatgatggtgaaagtggaaagggatttaagaagttgttgagggaatttaacgagtcacttagtgcttttattg |
43275184 |
T |
|
| Q |
320 |
ttggggactatgttccttggcttgattggttcagccatctttcaggatattatgcaagagcaaaaaaggtggctaaacaatttgatgatcttttgga |
416 |
Q |
| |
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|||| | |||||||||||||||||||||| | | |||| |||| |||| |||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
43275183 |
ttggagcctatgttccttggcttgattgggtgacccatgtttctggattttatgcaagagcaaaaaaagtggctaaacaatttgatgaacttttgga |
43275087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 92684 - 92601
Alignment:
| Q |
19 |
tcagctccatatggagagtattggaggcagttaaggagcatatgtgtgttacatcttcttagtgctaaaagcgttcgatctttt |
102 |
Q |
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|||||||| ||||| | |||||||| || ||||||| |||||||| ||||||||||||||||| |||| |||| ||||||| |
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| T |
92684 |
tcagctccttatggtcactattggagacaaataaggagtatatgtgttttacatcttcttagtgccaaaaaggttcaatctttt |
92601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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