View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_140 (Length: 275)
Name: NF6872A_low_140
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_140 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 9 - 269
Target Start/End: Complemental strand, 50157265 - 50157005
Alignment:
| Q |
9 |
aacatagaccaaaacaattaagttccaacatccatgcactccgctctattatgttttgccaaccgagacagtgccttggagatcataattgcttgatttc |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
50157265 |
aacaaagaccaaaacaattaagttccaacatccatgcactccgctctattatgttttgccaactgagacagtgccttggagattataattgcttgatttc |
50157166 |
T |
|
| Q |
109 |
gattaaataattgaactcagttacagtaaaagtgacgagttttcaagttatgtatagaagacttttggataacaatgtaccagtgaatatgctgctcggc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50157165 |
gattaaataattgaactcagttacagtaaaagtgacgagtgttcaagttatgtatagaatacttttggataacaatgtaccagtgaatatgctgctcggc |
50157066 |
T |
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| Q |
209 |
nnnnnnncttgtccaacatcaacttttagagtgcattcaaaccattccgaaattctaacga |
269 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50157065 |
aaaaaaacttgtccaacctcaacttttagagtgcattcaaaccattccgaaattctaacga |
50157005 |
T |
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