View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_144 (Length: 268)
Name: NF6872A_low_144
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_144 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 41704904 - 41705155
Alignment:
| Q |
10 |
gaagaccacttgcacactcaagtgctcgatttgtgtcaacatgacctgaattttccaagtaacggtgacaaatactagaggaagagcagttaagaggaga |
109 |
Q |
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| T |
41704904 |
gaagaccacttgcacactcaagtgctcgatttgtgtcaacttgacctgaattttccaagtaacggtgacaaatactagaggaagagcagttaagaggaga |
41705003 |
T |
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| Q |
110 |
aaccaagagacgaggggaacagttgaaaatgaacactgtgttggatgaagttatgttgaaaggaagtgactgatttaaccaaataccattgcttaccggc |
209 |
Q |
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| T |
41705004 |
aaccaagagacgaggggaacagttgaaaatgaacactgtgttggatgaagttatgttgaaaggaagtgactgatttaaccaaataccattgcttaccggc |
41705103 |
T |
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| Q |
210 |
atgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacacca |
261 |
Q |
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| T |
41705104 |
atgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacacca |
41705155 |
T |
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Back To:
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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 1453265 - 1453346
Alignment:
| Q |
180 |
tgatttaaccaaataccattgcttaccggcatgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacacca |
261 |
Q |
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| T |
1453265 |
tgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccaggtaaccaaggttgtggctgcaccacca |
1453346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 1464957 - 1465038
Alignment:
| Q |
180 |
tgatttaaccaaataccattgcttaccggcatgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacacca |
261 |
Q |
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| T |
1464957 |
tgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccaggtaaccaaggttgtggctgcaccacca |
1465038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 7564110 - 7564146
Alignment:
| Q |
207 |
ggcatgtcttgtgtgacacatgaaccgggtaaccaag |
243 |
Q |
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| T |
7564110 |
ggcatgtcttgtgtaacacatgaaccaggtaaccaag |
7564146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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