View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_160 (Length: 261)
Name: NF6872A_low_160
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_160 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 17435821 - 17435581
Alignment:
| Q |
14 |
gaataataccgacacactcaattattttatgtcaaacaaagcctaactctgtcgtttccaggctctctttttgaggtacacagtctcttctacatgctct |
113 |
Q |
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| T |
17435821 |
gaataataccgacacactcaattattttatgtcaaacaaagcctaactctgtcgtttccaggctctctttttgaggtacacaatctcttctacatgctct |
17435722 |
T |
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| Q |
114 |
tgtttcttgtattgctgagaatttcttcagttttacaattcatatgacgcaaaatttcaatttggtgtcagattttatattaatattctttcatatatcc |
213 |
Q |
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| T |
17435721 |
tgtttgttatatagctgagaatttcttcagttttacaattcatatgacgcaaaatctcaatttggtgtcagattttatattaatatcctttcatatatcc |
17435622 |
T |
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| Q |
214 |
actcttgatcatatacttgcatagtactcagcactttttgt |
254 |
Q |
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| T |
17435621 |
aatcttgatcatatacttgcatagtactcaacactttttgt |
17435581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 17456896 - 17456657
Alignment:
| Q |
14 |
gaataataccgacacactcaattattttatgtcaaacaaagcctaactctgtcgtttccaggctctctttttgaggtacacagtctcttctacatgctct |
113 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
17456896 |
gaataatatcaacacactcaattattttatgtcaaacaaagcctaactctgtcgtttccaggctctctttttgaggtacacaatctcttctacatgcttt |
17456797 |
T |
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| Q |
114 |
tgtttcttgtattgctgagaatttcttcagttttacaatt-----------catatgacgcaaaatttcaatttggtgtcagattttatattaatattct |
202 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||| || |||| | |||||| ||||| |||||||||| | |||| |
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| T |
17456796 |
tgtttcttgtattgctgagaatttctccagttttacaattcatacccgtttcatatgatgcgaaatcttaatttgatgtcaaattttatatt-gttttct |
17456698 |
T |
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| Q |
203 |
ttcatatatccactcttgatcatatacttgcatagtactca |
243 |
Q |
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|||||||||||| | || ||||||||||||||||| ||||| |
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| T |
17456697 |
ttcatatatccattttttatcatatacttgcatagcactca |
17456657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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