View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6872A_low_165 (Length: 259)

Name: NF6872A_low_165
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6872A_low_165
NF6872A_low_165
[»] chr6 (10 HSPs)
chr6 (13-221)||(26975517-26975725)
chr6 (13-217)||(26636212-26636416)
chr6 (13-217)||(26742178-26742382)
chr6 (13-221)||(26950309-26950517)
chr6 (13-221)||(26959692-26959900)
chr6 (37-221)||(27664613-27664797)
chr6 (14-221)||(26849279-26849486)
chr6 (13-218)||(25074436-25074638)
chr6 (20-128)||(31288878-31288986)
chr6 (165-221)||(31288986-31289042)
[»] chr2 (1 HSPs)
chr2 (13-218)||(17992626-17992831)


Alignment Details
Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 26975517 - 26975725
Alignment:
Q  13 gacagatatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttg 112  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  26975517 gacagaaatgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattaccttgttg 26975616  T
Q  113 gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaa 212  Q
    |||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26975617 gactcaaatctcgaatattaaaagtgaactcactactagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaa 26975716  T
Q  213 gacaacact 221  Q
    |||||||||    
T  26975717 gacaacact 26975725  T

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Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 26636212 - 26636416
Alignment:
Q  13 gacagatatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttg 112  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26636212 gacagaaatgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttg 26636311  T
Q  113 gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  |||||||| ||    
T  26636312 gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccgaaggaatgggcaa 26636411  T
Q  213 gacaa 217  Q
    |||||    
T  26636412 gacaa 26636416  T

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Target: chr6; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 26742178 - 26742382
Alignment:
Q  13 gacagatatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttg 112  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26742178 gacagaaatgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttg 26742277  T
Q  113 gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  |||||||| ||    
T  26742278 gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccgaaggaatgggcaa 26742377  T
Q  213 gacaa 217  Q
    |||||    
T  26742378 gacaa 26742382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 26950309 - 26950517
Alignment:
Q  13 gacagatatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttg 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26950309 gacagaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttg 26950408  T
Q  113 gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaa 212  Q
    |||||||||||||||||||||||||||| ||||||  ||| ||||| || |  |||||||||| ||| ||||||||||||||||||||||||||||| ||    
T  26950409 gactcaaatctcgaatatcagaagtgaattcactttcagagttgggatcaaacgatggagtctgcatgataggaatccttggaactgggggaatgggaaa 26950508  T
Q  213 gacaacact 221  Q
    |||||||||    
T  26950509 gacaacact 26950517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 26959692 - 26959900
Alignment:
Q  13 gacagatatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttg 112  Q
    |||||| |||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||| ||||    
T  26959692 gacagaaatgagtatgaacgtgattttattgaaaaaatagttacagacgtctccaacaagattaaccatgttcctttacatgttgctgattaccttgttg 26959791  T
Q  113 gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaa 212  Q
    | |||||||||||||||||| ||||||| ||||||  ||| ||||| || |  |||||||||| ||| |||||||||||||||||||| |||||||| ||    
T  26959792 gtctcaaatctcgaatatcaaaagtgaattcactttcagagttgggatcaaacgatggagtctgcatgataggaatccttggaactggaggaatgggaaa 26959891  T
Q  213 gacaacact 221  Q
    |||||||||    
T  26959892 gacaacact 26959900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 37 - 221
Target Start/End: Complemental strand, 27664797 - 27664613
Alignment:
Q  37 tttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaaatctcgaatatcagaag 136  Q
    ||||||||| |||||||||||||||||||| ||||||||||||    || | ||||||||||||| ||||| ||||||||| ||||||||||||||||||    
T  27664797 tttattgaagaaatagttacagacgtctccaacaagatcaaccgttgtcatttacatgttgctgagtaccttgttggactcgaatctcgaatatcagaag 27664698  T
Q  137 tgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaacact 221  Q
    |||| ||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||||| ||  ||||||||||||||||    
T  27664697 tgaattcacttctagacttgggatgtaccgatggagtctacataataggaatccttggaactggaggtctgggtaagacaacact 27664613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 26849279 - 26849486
Alignment:
Q  14 acagatatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttgg 113  Q
    ||||| |||||||||||| | |||||||||  ||||||||||  || |||||| ||||||||||||| |||||| | ||||||||||||||||| |||||    
T  26849279 acagaaatgaatatgaacaccattttattgggaaaatagttaaggatgtctccaacaagatcaaccatgttcctttgcatgttgctgattaccttgttgg 26849378  T
Q  114 actcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaag 213  Q
    ||| ||||||||||||||||||||||| ||||||||||| ||||  |||| |||||||||||  | ||||||||||||||||||||| |||||||| ||     
T  26849379 acttaaatctcgaatatcagaagtgaattcacttctagaattggaatctaatgatggagtctggaaaataggaatccttggaactggaggaatgggaaaa 26849478  T
Q  214 acaacact 221  Q
    ||||||||    
T  26849479 acaacact 26849486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 25074436 - 25074638
Alignment:
Q  13 gacagatatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttg 112  Q
    |||||| ||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| |||||  ||||| |||||||| |||||||||| ||||    
T  25074436 gacagaaatgaatatgaacgtgattttattgaaaaaatagttagagacgtctccaacaagattaaccaaattcctttacatgttactgattaccttgttg 25074535  T
Q  113 gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaa 212  Q
    | ||   ||||||||| ||||||||||| ||||||||||||||||| | ||   ||||||| | ||||||||||||| |||||||||| |||||||| ||    
T  25074536 gtcttcgatctcgaatttcagaagtgaattcacttctagacttgggatata---atggagtatgcataataggaatcgttggaactggtggaatgggcaa 25074632  T
Q  213 gacaac 218  Q
    ||||||    
T  25074633 gacaac 25074638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 31288878 - 31288986
Alignment:
Q  20 atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa 119  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||| ||||| |||||    
T  31288878 atgaatatgaacgagattttattgaaaaaatagttacagatgtctccaacaagattaaccatgttcctttacatgttgctgattaccttgttggtctcaa 31288977  T
Q  120 atctcgaat 128  Q
    |||||||||    
T  31288978 atctcgaat 31288986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 31288986 - 31289042
Alignment:
Q  165 tgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaacact 221  Q
    ||||||||||| |||||||||||| ||||||||||| |||| |||||| ||||||||    
T  31288986 tgatggagtctgcataataggaatacttggaactggaggaaggggtaaaacaacact 31289042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 17992831 - 17992626
Alignment:
Q  13 gacagatatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttg 112  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||   ||| ||||||| |||||||||||  |||||||||| ||||||||  |||    
T  17992831 gacagaaatgaatatgaacgtgattttattgaaaaaatagttacagacacttccaacaagattaaccacgttccattacatgttgccgattaccttattg 17992732  T
Q  113 gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaa 212  Q
    | |||||||||||||||||||||||||| ||||||||||||||||  | || |||||| |||| |||||||||||||||||| ||||| |||||||| ||    
T  17992731 gtctcaaatctcgaatatcagaagtgaattcacttctagacttggaatataatgatggtgtctgcataataggaatccttggtactggtggaatgggcaa 17992632  T
Q  213 gacaac 218  Q
    ||||||    
T  17992631 gacaac 17992626  T

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