View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6872A_low_166 (Length: 259)
Name: NF6872A_low_166
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_166 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 21642672 - 21642420
Alignment:
| Q |
1 |
gaaaacatctcccaaggtttacgtcattcaacgtagaacaagcttaaataacggaagatagagtaaaagcattgggttgaatagggaatgccaacatttc |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
21642672 |
gaaagcatctcccaaggtttacgtcatttaacgcagaacaagctttgataacagaagatagagtaaaagcattgggttgaacaggaaatgccaacatttc |
21642573 |
T |
|
| Q |
101 |
gtagaataaagatatcgactgatgtggctggccggagcgagtgtaaccggagataagtgaagtccatgagataccatctttgacgtgaagtgagtcgaag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21642572 |
gtagaataaagatatcgattgatgtggcaggtcggagcgagtgtaaccggagataagtgaagtccatgagatgacatctttgacgtgaagtgagtcgaag |
21642473 |
T |
|
| Q |
201 |
agatgacgggcgtgagataaatgggggccggggtttaatttaaagtaaagagt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21642472 |
agatgacgggcgtgagataaatgggggccggggtttaatttaaagtaaagagt |
21642420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University