View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_168 (Length: 255)
Name: NF6872A_low_168
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_168 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 28675836 - 28675602
Alignment:
| Q |
6 |
aagaacaagatcaaagtctaactctatgttcttaatcctaaggaaaaggaacactacttccattgaaaccaaagaaccttcttcccccaaagtcacttgc |
105 |
Q |
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| T |
28675836 |
aagaacaagatcaaagtctaactctatgttcttaatcctaaggaaaaagaacactacttccattgaaaccaaagaaccttcttcccctaaagtcacttgc |
28675737 |
T |
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| Q |
106 |
atgggtcaagttcgagttaaacgctcctccaaacaacccaccactaaaaagggtcgtccctcctccggtgacggagctccgagtaaatgccgctgccgtt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28675736 |
atgggtcaagttcgagttaaacgctcctccaaacaacccaccactaaaaagggtcgtccctcctccggtgacggagctccgagtaaatgccgctgccctt |
28675637 |
T |
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| Q |
206 |
tttggtgggtcccacatactctcttttgttgccat |
240 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
28675636 |
tttggtgggtcccacatactctcttttgttgccat |
28675602 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 40638109 - 40638148
Alignment:
| Q |
77 |
aagaaccttcttcccccaaagtcacttgcatgggtcaagt |
116 |
Q |
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| T |
40638109 |
aagaaccttcttcccctaaagtcacttgcatgggtcaagt |
40638148 |
T |
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