View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6872A_low_169 (Length: 254)
Name: NF6872A_low_169
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_169 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 43735212 - 43734964
Alignment:
| Q |
1 |
aaaaaatattgcattcaagttcaaccttaagctatcagtcggagcaacaagggttgagtcgttgttttggtgatacattccaaatgaatccttaggtgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43735212 |
aaaaaatattgcattcaagttcaaccttaatctatcagtcggagcaacaagggttgagtcgttgttttggtgatacattccaactgaatccttaggtgga |
43735113 |
T |
|
| Q |
101 |
agtgagagatttctgttcttataggaaacaactattacttgagcaaagccactaagcatgctgctatgtggtttgttcttgacataacgcgacgaaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43735112 |
agtgagagatttctgttcttataggaaacaactattacttgagcaaagccactaagcatgctgctatgtggtttgttcttgacataacgcgacgaaacaa |
43735013 |
T |
|
| Q |
201 |
ggaagaacaacaaagttgacaagaacataacggcagctggaacaccaaa |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43735012 |
ggaagaacaacaaagttgacaagaacataacggcagctggaacaccaaa |
43734964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University