View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_172 (Length: 254)
Name: NF6872A_low_172
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_172 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 31506896 - 31506658
Alignment:
| Q |
10 |
cagagatcttatttatgaacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggt |
109 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31506896 |
cagagatcttatttatgaatgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggt |
31506797 |
T |
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| Q |
110 |
cactgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgcttaggtctttatacgagtacattgtgtcgtacctagtccc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31506796 |
cactgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtccc |
31506697 |
T |
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| Q |
210 |
agttggaaatactattgtccttagagctagagcaatgtc |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
31506696 |
agttggaaatactattgtccttagagctagagcaatgtc |
31506658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 34495863 - 34496101
Alignment:
| Q |
10 |
cagagatcttatttatgaacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggt |
109 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34495863 |
cagagatcttatttatgaacgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggt |
34495962 |
T |
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| Q |
110 |
cactgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgcttaggtctttatacgagtacattgtgtcgtacctagtccc |
209 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
34495963 |
cactgtcggcaacaataccagcaccagcttgaaggtaagcaatccactcttgtcgtttgtttaggtctttatacgagtacattgtatcgtacctagtccc |
34496062 |
T |
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| Q |
210 |
agttggaaatactattgtccttagagctagagcaatgtc |
248 |
Q |
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| T |
34496063 |
agttggaaatactattgtccttagagctagagcaatgtc |
34496101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 27607410 - 27607648
Alignment:
| Q |
10 |
cagagatcttatttatgaacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggt |
109 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27607410 |
cagagatcttatttatgaacgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggt |
27607509 |
T |
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| Q |
110 |
cactgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgcttaggtctttatacgagtacattgtgtcgtacctagtccc |
209 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
27607510 |
cactgtcggcaacaatacctgcaccagcttgaaggtaagcaatccactcttgtcgtttgtttaggtctttatacgagtacattgtatcgtacctagtccc |
27607609 |
T |
|
| Q |
210 |
agttggaaatactattgtccttagagctagagcaatgtc |
248 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
27607610 |
agttggaaatactattgtccttagagctagagctatgtc |
27607648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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