View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_174 (Length: 253)
Name: NF6872A_low_174
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_174 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 45200606 - 45200841
Alignment:
| Q |
12 |
ggacatcaacaccacaccgacaattgattattgttgtcgacatgtcaatgtctgttattcatagattgtaaaaaataaaatgtaacaaactgtgagtttg |
111 |
Q |
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| T |
45200606 |
ggacatcaacaccacaccgacaaatgattattgttgtcgacatgtcaatgtctgttattcatagattgtaacaaataaaatgtaacaaacggtgagtttt |
45200705 |
T |
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| Q |
112 |
tcaaaatcacggtgacatcatgattttgttgaagctatgtatggcttttaccaaaatcacaatgactcatcgtgattctaatgctacgcttcaccgtcaa |
211 |
Q |
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| T |
45200706 |
tcaaaatcacagtgacattatgattttgttgaagctaagtatggcttttaccaaaatcacaatgactcatcgtgattctaaagctacgcttcaccgtcaa |
45200805 |
T |
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| Q |
212 |
tcaaaacattcacaaagtagaaaaacttacgaggtc |
247 |
Q |
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| T |
45200806 |
tcaaaacattcacaaagtagaaaaacttacgaggtc |
45200841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 7873062 - 7873108
Alignment:
| Q |
103 |
gtgagtttgtcaaaatcacggtgacatcatgattttgttgaagctat |
149 |
Q |
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| T |
7873062 |
gtgagtttgataaaattacggtgacaccatgattttgttgaagctat |
7873108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 23585692 - 23585733
Alignment:
| Q |
104 |
tgagtttgtcaaaatcacggtgacatcatgattttgttgaag |
145 |
Q |
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| T |
23585692 |
tgagtttgacaaaatcacagtgacaacatgattttgttgaag |
23585733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 27870987 - 27870946
Alignment:
| Q |
103 |
gtgagtttgtcaaaatcacggtgacatcatgattttgttgaa |
144 |
Q |
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| T |
27870987 |
gtgagtttgataaaatcacggtgacaccatgattttgttgaa |
27870946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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