View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_175 (Length: 252)
Name: NF6872A_low_175
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_175 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 37704699 - 37704458
Alignment:
| Q |
11 |
atgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatga |
110 |
Q |
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| T |
37704699 |
atgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatga |
37704600 |
T |
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| Q |
111 |
acaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaat |
210 |
Q |
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| T |
37704599 |
acaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaat |
37704500 |
T |
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| Q |
211 |
acgtagactcaatttgcaaacaatctaataagtcaacctttt |
252 |
Q |
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| T |
37704499 |
acgtagactcaatttgcaaacaatctaataagtcaacctttt |
37704458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 37699224 - 37698977
Alignment:
| Q |
11 |
atgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagttta |
106 |
Q |
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| T |
37699224 |
atgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtcttggttttccaagatgttatttagttta |
37699125 |
T |
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| Q |
107 |
atgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagg |
206 |
Q |
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| T |
37699124 |
atgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcatatcagtatacggttatgaaaagcacccccaacacaaaataagg |
37699025 |
T |
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| Q |
207 |
gaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttt |
252 |
Q |
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| T |
37699024 |
gaatacctagactcaatgtttgtaaacaatctaataactcaaactttt |
37698977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 37437764 - 37437531
Alignment:
| Q |
11 |
atgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagttta |
106 |
Q |
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| T |
37437764 |
atgaatttgttatcttattatcacaacttgcaataagattccaactt----gctaattacgttcgaaaagtcttggtcttccaatatgttatttagttta |
37437669 |
T |
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| Q |
107 |
atgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagg |
206 |
Q |
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| T |
37437668 |
atgaacaccaaacttttctatgattgttattgaattaatattgttgccaattgtcatatcactatacggttatgaaaagca-ccccacattaaaacaagg |
37437570 |
T |
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| Q |
207 |
gaatacgtagactcaatttgcaaacaatctaataagtca |
245 |
Q |
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| T |
37437569 |
gaatagctagactgaatttgtaaacaatctaataagtca |
37437531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 37698861 - 37698732
Alignment:
| Q |
11 |
atgaatttgttatcttatcacaacttgaaataagattccaactttcgtgc----taattacgttcaaaaagtc-tggtcttcgaagatattatttagttt |
105 |
Q |
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| T |
37698861 |
atgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttagttt |
37698762 |
T |
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| Q |
106 |
aatgaacaccaaacttttctatgatggtta |
135 |
Q |
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| T |
37698761 |
aacgaacaccaaacttttgtatgattgtta |
37698732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 37698697 - 37698640
Alignment:
| Q |
195 |
aacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttt |
252 |
Q |
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| T |
37698697 |
aacaaaataagggaatacttagactcaatttgtaaacaatctaataagtcaaactttt |
37698640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 16841007 - 16841109
Alignment:
| Q |
26 |
tatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttc |
124 |
Q |
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| T |
16841007 |
tatcacaacttgcaataagattccaactta-gtgctaattacgttcaaaaagtcttggtcttccaagattttatttagtttattaaacaccaaacttttg |
16841105 |
T |
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| Q |
125 |
tatg |
128 |
Q |
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|||| |
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| T |
16841106 |
tatg |
16841109 |
T |
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