View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6872A_low_176 (Length: 252)

Name: NF6872A_low_176
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6872A_low_176
NF6872A_low_176
[»] chr7 (6 HSPs)
chr7 (12-191)||(5376279-5376458)
chr7 (54-209)||(5368062-5368214)
chr7 (40-169)||(36853046-36853175)
chr7 (87-186)||(35169949-35170048)
chr7 (37-151)||(24547662-24547777)
chr7 (113-162)||(46214467-46214516)
[»] chr8 (14 HSPs)
chr8 (90-186)||(26819258-26819354)
chr8 (107-164)||(3017471-3017528)
chr8 (113-178)||(26762851-26762916)
chr8 (108-157)||(39560339-39560388)
chr8 (111-163)||(10744257-10744309)
chr8 (108-186)||(30011758-30011836)
chr8 (108-179)||(16527482-16527553)
chr8 (41-136)||(34338653-34338748)
chr8 (108-153)||(2309154-2309200)
chr8 (111-165)||(43059451-43059505)
chr8 (108-157)||(29705899-29705948)
chr8 (49-105)||(4670602-4670657)
chr8 (94-163)||(16168305-16168376)
chr8 (108-172)||(31188874-31188938)
[»] chr6 (6 HSPs)
chr6 (92-172)||(733580-733662)
chr6 (107-164)||(18361298-18361355)
chr6 (113-158)||(31650307-31650352)
chr6 (86-165)||(8782972-8783051)
chr6 (109-172)||(25094709-25094772)
chr6 (109-178)||(7952307-7952376)
[»] chr5 (8 HSPs)
chr5 (79-158)||(36261960-36262039)
chr5 (41-160)||(35035571-35035691)
chr5 (111-162)||(18871012-18871063)
chr5 (108-158)||(36639769-36639819)
chr5 (92-158)||(16230759-16230827)
chr5 (115-179)||(16215390-16215454)
chr5 (108-159)||(16962198-16962248)
chr5 (95-185)||(7705307-7705397)
[»] chr2 (5 HSPs)
chr2 (43-178)||(10231799-10231935)
chr2 (66-163)||(9529506-9529600)
chr2 (109-163)||(5129658-5129712)
chr2 (128-165)||(35991377-35991414)
chr2 (109-161)||(44250661-44250713)
[»] chr1 (6 HSPs)
chr1 (94-186)||(14303921-14304015)
chr1 (43-125)||(16979581-16979664)
chr1 (108-186)||(24126880-24126957)
chr1 (115-149)||(32408099-32408133)
chr1 (125-178)||(15867621-15867674)
chr1 (37-162)||(34796781-34796907)
[»] chr4 (3 HSPs)
chr4 (109-178)||(1132154-1132223)
chr4 (108-178)||(10997329-10997399)
chr4 (118-171)||(18966004-18966057)
[»] chr3 (5 HSPs)
chr3 (107-165)||(48183708-48183765)
chr3 (92-154)||(48553069-48553131)
chr3 (108-157)||(38900006-38900055)
chr3 (113-158)||(43220827-43220872)
chr3 (94-163)||(44009252-44009323)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 5376458 - 5376279
Alignment:
Q  12 atgaatgattaaaagacgtgttttaaataatgagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccatgt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||    
T  5376458 atgaatgattaaaagacgtgttttaaataatgagtttaattttgatatattgtcagtgtaaaaaggctttacaacattagaaaatcacaaccaaccatgt 5376359  T
Q  112 gtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgtaatacac 191  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5376358 gcgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgtaatacac 5376279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 5368062 - 5368214
Alignment:
Q  54 tgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaa 153  Q
    ||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||  |||||||||||||| ||   |||||||| |||||||||||||    
T  5368062 tgatatattgtcagtgtaaaaaggctttacagcatcagaaaatcacaaccaatcattcgtgactttagaagttgt---gattacagccaaacgtttttaa 5368158  T
Q  154 tgatctgacgatcatgattcattgaaagtgtaatacaccgacaatttatctgaatt 209  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||    
T  5368159 tgatctgatgatcatgattcattgaacgtgtaatacactgacaatttatatgaatt 5368214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 36853046 - 36853175
Alignment:
Q  40 aatgagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccat--gtgtgactttagaagtagttatgattac 137  Q
    ||||||||||||||||||| | |||| || |||||||  ||||||  ||||| ||||||||||||| |||  |||||||||||||||||||||||||||     
T  36853046 aatgagtttaattttgatacactgtcggtataaaaag--tttacattgtcagtaaatcacaaccaatcatatgtgtgactttagaagtagttatgattat 36853143  T
Q  138 agtcaaacgtttttaatgatctgacgatcatg 169  Q
    | |||||  |||||| ||||||||| ||||||    
T  36853144 aatcaaatatttttattgatctgactatcatg 36853175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 35170048 - 35169949
Alignment:
Q  87 gtcagcaaatcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgtaa 186  Q
    |||| ||||||| |||||| |||||||||||||||||||||||||||||| |||||||| | |||||| |||| ||||| |  ||| ||||| |||||||    
T  35170048 gtcaacaaatcataaccaatcatgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctaacgattacaattgattgacagtgtaa 35169949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 24547662 - 24547777
Alignment:
Q  37 aataatgagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccatgt--gtgactttagaagtagttatgat 134  Q
    ||||| |||||| | ||||||| |  ||||||||||||||  ||||||  ||||  ||||||||||||| ||| |  |||| ||||||||||||||||||    
T  24547662 aataaagagtttgaatttgatacaccgtcagtgtaaaaagt-tttacactgtcaataaatcacaaccaatcatatctgtgattttagaagtagttatgat 24547760  T
Q  135 tacagtcaaacgttttt 151  Q
    |  |||||||| |||||    
T  24547761 tgaagtcaaacattttt 24547777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 46214516 - 46214467
Alignment:
Q  113 tgactttagaagtagttatgattacagtcaaacgtttttaatgatctgac 162  Q
    |||||||||||||  | ||||||| |||||||||||||| ||||||||||    
T  46214516 tgactttagaagtcataatgattaaagtcaaacgttttttatgatctgac 46214467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 26819354 - 26819258
Alignment:
Q  90 agcaaatcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgtaa 186  Q
    |||||||||||||||| |||||||||||||||||||||||  ||| | |||||||| ||||||||||||| |||||  | ||| |||||| ||||||    
T  26819354 agcaaatcacaaccaatcatgtgtgactttagaagtagttgcgataaaagtcaaacatttttaatgatctaacgattgtaattgattgaatgtgtaa 26819258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 3017471 - 3017528
Alignment:
Q  107 catgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacga 164  Q
    |||||||||||||  ||||||||||||||| |||||||| ||||||||||||||||||    
T  3017471 catgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacga 3017528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 26762916 - 26762851
Alignment:
Q  113 tgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattga 178  Q
    |||||||||||||| ||||||||| ||||||||||||||| |||||||| ||| |||||| |||||    
T  26762916 tgactttagaagtaattatgattaaagtcaaacgtttttactgatctgaggattatgattgattga 26762851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 39560339 - 39560388
Alignment:
Q  108 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgat 157  Q
    |||| |||||||||||||||||||||||| |||||||| |||||||||||    
T  39560339 atgtatgactttagaagtagttatgattaaagtcaaacatttttaatgat 39560388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 10744309 - 10744257
Alignment:
Q  111 tgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacg 163  Q
    |||||||||||||| |||||| |||| |||||||||||||||||||| |||||    
T  10744309 tgtgactttagaagcagttataattaaagtcaaacgtttttaatgatgtgacg 10744257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 30011758 - 30011836
Alignment:
Q  108 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgtaa 186  Q
    |||||||| |||||||||||||||||||  |||||||| ||||||||| | |||| |  |||||| ||||| |||||||    
T  30011758 atgtgtgattttagaagtagttatgattgaagtcaaacatttttaatgttatgacaagtatgattgattgacagtgtaa 30011836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 16527482 - 16527553
Alignment:
Q  108 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaa 179  Q
    |||| |||||||||||||||||| || || | ||||||||| |||||||||||| ||| | |||| ||||||    
T  16527482 atgtatgactttagaagtagttacgactaaactcaaacgttcttaatgatctgatgattacgattgattgaa 16527553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 136
Target Start/End: Original strand, 34338653 - 34338748
Alignment:
Q  41 atgagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccatgtgtgactttagaagtagttatgatta 136  Q
    ||||||| |||||||||| | |||| |||||||||    ||||| |||||   ||| ||||| || |||||||||||||| |||||||||||||||    
T  34338653 atgagttcaattttgatacactgtccgtgtaaaaaaatgttacatcgtcaaggaatgacaacaaatcatgtgtgactttaaaagtagttatgatta 34338748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 2309200 - 2309154
Alignment:
Q  108 atgtgtgactttagaagtagttat-gattacagtcaaacgtttttaa 153  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||||    
T  2309200 atgtgtgactttagaagtagttatcgattacagccaaatgtttttaa 2309154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 43059505 - 43059451
Alignment:
Q  111 tgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgat 165  Q
    ||||||||||||||||||||| |||| |||||||  ||||| ||||| |||||||    
T  43059505 tgtgactttagaagtagttattattaaagtcaaagttttttgatgatttgacgat 43059451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 29705948 - 29705899
Alignment:
Q  108 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgat 157  Q
    |||| ||||||||||||| |||||||| | |||||||||||| |||||||    
T  29705948 atgtatgactttagaagtggttatgataaaagtcaaacgtttataatgat 29705899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 4670602 - 4670657
Alignment:
Q  49 aattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaa 105  Q
    ||||||||||||| ||||||||||||| | ||||||  |||| ||||||||||||||    
T  4670602 aattttgatatatcgtcagtgtaaaaa-gttttacatggtcaacaaatcacaaccaa 4670657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 16168376 - 16168305
Alignment:
Q  94 aatcacaaccaaccatgtgtg--actttagaagtagttatgattacagtcaaacgtttttaatgatctgacg 163  Q
    |||||||||||| ||||||||  ||||||  | |||| ||||||| ||||||| |||||||||||| |||||    
T  16168376 aatcacaaccaatcatgtgtgtcactttaatattagtgatgattaaagtcaaatgtttttaatgatttgacg 16168305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 31188938 - 31188874
Alignment:
Q  108 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgatt 172  Q
    |||||||||||| |||||| ||||||||  ||| |||| ||| |||||||||||| || ||||||    
T  31188938 atgtgtgactttcgaagtaattatgattgaagttaaacatttgtaatgatctgacaattatgatt 31188874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 733662 - 733580
Alignment:
Q  92 caaatcacaaccaaccat--gtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgatt 172  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||| ||||  |||||||||||||||| ||| | ||||||    
T  733662 caaatcacaaccaaccatacgtgtgactttagaagtagttacgattaaagtcggacgtttttaatgatctaacggttatgatt 733580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 18361298 - 18361355
Alignment:
Q  107 catgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacga 164  Q
    |||||||||||||  ||||||||||||||| ||| |||||||||||||||||||||||    
T  18361298 catgtgtgactttcaaagtagttatgattaaagttaaacgtttttaatgatctgacga 18361355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 31650352 - 31650307
Alignment:
Q  113 tgactttagaagtagttatgattacagtcaaacgtttttaatgatc 158  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||    
T  31650352 tgactttagaagtagttatgattaaagtcaaacatttttaatgatc 31650307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 8783051 - 8782972
Alignment:
Q  86 cgtcagcaaatcacaaccaaccatgtgt--gactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgat 165  Q
    ||||| |||||||||||||| ||| | |  |||||| |||||||||||||||| |||||||  |||||||||||| ||||||    
T  8783051 cgtcaacaaatcacaaccaatcatatatatgacttttgaagtagttatgattaaagtcaaa--tttttaatgatcggacgat 8782972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 25094709 - 25094772
Alignment:
Q  109 tgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgatt 172  Q
    |||||||||||| ||||| ||||||||| |||||||| | |||||||||  |||||| ||||||    
T  25094709 tgtgtgactttaaaagtacttatgattaaagtcaaacatgtttaatgattagacgattatgatt 25094772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 7952376 - 7952307
Alignment:
Q  109 tgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattga 178  Q
    |||||| |||||||||| |||||||| | ||| ||| ||||||||||||| |||| | |||||| |||||    
T  7952376 tgtgtggctttagaagttgttatgataaaagtgaaatgtttttaatgatccgacggttatgattgattga 7952307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 36261960 - 36262039
Alignment:
Q  79 tttacaacgtcagcaaatcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatc 158  Q
    |||||| ||||||||||||| || |||  || |||||||||||||||||||||||||| || |||| |||||||||||||    
T  36261960 tttacaccgtcagcaaatcagaaacaattatatgtgactttagaagtagttatgattaaagccaaatgtttttaatgatc 36262039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 35035691 - 35035571
Alignment:
Q  41 atgagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccat--gtgtgactttagaagtagttatgattaca 138  Q
    |||||||||||||||||| | |||| || ||||||   ||||||  ||||| ||||||||||||| |||  |||||| |||||||||||||||||||| |    
T  35035691 atgagtttaattttgatacactgtcggtataaaaaat-tttacattgtcagtaaatcacaaccaatcatatgtgtgattttagaagtagttatgattaaa 35035593  T
Q  139 gtcaaacgtttttaatgatctg 160  Q
     |||||  |||||| |||||||    
T  35035592 atcaaatatttttattgatctg 35035571  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 18871063 - 18871012
Alignment:
Q  111 tgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgac 162  Q
    ||||||||||||||||||||| ||||  ||||||||| ||||||||||||||    
T  18871063 tgtgactttagaagtagttatcattaaggtcaaacgtgtttaatgatctgac 18871012  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 36639769 - 36639819
Alignment:
Q  108 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatc 158  Q
    ||||||||||||||||||||||||||||| | | ||||||| |||||||||    
T  36639769 atgtgtgactttagaagtagttatgattaaattgaaacgttcttaatgatc 36639819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 16230759 - 16230827
Alignment:
Q  92 caaatcacaaccaaccatgtgt--gactttagaagtagttatgattacagtcaaacgtttttaatgatc 158  Q
    |||||||||||||| ||| |||  || |||||||||||||||||||| |||||||| |||| |||||||    
T  16230759 caaatcacaaccaatcatatgtttgattttagaagtagttatgattaaagtcaaacattttaaatgatc 16230827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 16215454 - 16215390
Alignment:
Q  115 actttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaa 179  Q
    |||||||||||||||| ||||  |||||||| |||||||| ||||| | || |||||||||||||    
T  16215454 actttagaagtagttacgattcaagtcaaacatttttaataatctgtcaattatgattcattgaa 16215390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 16962248 - 16962198
Alignment:
Q  108 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatct 159  Q
    ||||| |||||||||| |||||||||||| ||||||||| ||||||||||||    
T  16962248 atgtgcgactttagaaatagttatgattaaagtcaaacg-ttttaatgatct 16962198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 7705397 - 7705307
Alignment:
Q  95 atcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgta 185  Q
    |||||||| || |||||||||||||| |||| |||||||| | ||||||| ||||  ||||| |||||  | |||||| ||||| ||||||    
T  7705397 atcacaacaaatcatgtgtgactttaaaagtggttatgataaaagtcaaatgtttccaatgacctgactgttatgattgattgacagtgta 7705307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 10231799 - 10231935
Alignment:
Q  43 gagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaacc--atgtgtgactttagaagtagttatgattacagt 140  Q
    ||||||||||||||||||||||||||||||||| | ||||||  |||  || || |||| ||| |  |||||||| ||||||| |||||||||| | |||    
T  10231799 gagtttaattttgatatattgtcagtgtaaaaa-gttttacactgtccacatattacaatcaatcatatgtgtgattttagaaatagttatgataaaagt 10231897  T
Q  141 caaacgtttttaatgatctgacgatcatgattcattga 178  Q
    |||| | |||||||||||||| |||  ||||| |||||    
T  10231898 caaatgattttaatgatctgatgattgtgattgattga 10231935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 163
Target Start/End: Original strand, 9529506 - 9529600
Alignment:
Q  66 agtgtaaaaaggctttacaacgtcagcaaatcacaaccaaccat--gtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacg 163  Q
    |||||||||||  |||||| | |||||||||||||||||| |||  ||||||||||| ||||| |||| |    |||||||||||||||||||| |||||    
T  9529506 agtgtaaaaagt-tttacatcatcagcaaatcacaaccaatcatatgtgtgactttaaaagtaattataa----agtcaaacgtttttaatgatgtgacg 9529600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 5129712 - 5129658
Alignment:
Q  109 tgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacg 163  Q
    |||||||||||||||||| |||||||||  |||||| |||||| ||||| |||||    
T  5129712 tgtgtgactttagaagtatttatgattaaggtcaaatgttttttatgatatgacg 5129658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 35991377 - 35991414
Alignment:
Q  128 ttatgattacagtcaaacgtttttaatgatctgacgat 165  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  35991377 ttattattagagtcaaacgtttttaatgatctgacgat 35991414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 44250661 - 44250713
Alignment:
Q  109 tgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctga 161  Q
    ||||||||||||||| |||||||||||| |  ||||| |||||||||| ||||    
T  44250661 tgtgtgactttagaaatagttatgattaaaagcaaacatttttaatgagctga 44250713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 14304015 - 14303921
Alignment:
Q  94 aatcacaaccaaccatgtg--tgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgtaa 186  Q
    |||||||||||| ||| ||  |||||||| ||||||||||||||| |||||||| ||| ||| |||||||||||  ||||| ||||| |||||||    
T  14304015 aatcacaaccaatcatatgagtgactttaaaagtagttatgattaaagtcaaacttttataacgatctgacgatgctgattgattgacagtgtaa 14303921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 16979581 - 16979664
Alignment:
Q  43 gagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaac--catgtgtgactttagaagt 125  Q
    |||||||||||||||| | |||||||||||||| | ||||||  |||| |||||||||||||||   || |||||||||||||||    
T  16979581 gagtttaattttgatacactgtcagtgtaaaaa-gatttacactgtcaacaaatcacaaccaacaatatatgtgactttagaagt 16979664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 24126957 - 24126880
Alignment:
Q  108 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgtaa 186  Q
    |||| ||| |||||||||||||||| ||| |||||||  ||||||||||||||| ||| | |||| ||||| |||||||    
T  24126957 atgtttgattttagaagtagttatgtttaaagtcaaa-ttttttaatgatctgatgattaagattgattgatagtgtaa 24126880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 32408133 - 32408099
Alignment:
Q  115 actttagaagtagttatgattacagtcaaacgttt 149  Q
    |||||||||||||||||||||| ||||||||||||    
T  32408133 actttagaagtagttatgattaaagtcaaacgttt 32408099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 15867621 - 15867674
Alignment:
Q  125 tagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattga 178  Q
    |||||||||||| ||||||||  |||||||||| ||||||| |||||| |||||    
T  15867621 tagttatgattaaagtcaaacagttttaatgatatgacgattatgattgattga 15867674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 162
Target Start/End: Original strand, 34796781 - 34796907
Alignment:
Q  37 aataatgagtttaattttgatatattgtcagtgtaaaaaggctttacaacgtcagcaaatcacaaccaacc--atgtgtgactttagaagtagttatgat 134  Q
    ||||||||| |||||||| ||| | ||||| || ||||||  ||||||| ||||||| || ||||||||||  ||| || || |||||| ||||||||||    
T  34796781 aataatgagcttaattttcatacactgtcactgcaaaaagt-tttacaatgtcagcatatgacaaccaaccatatgagttacgttagaattagttatgat 34796879  T
Q  135 tacagtcaaacgtttttaatgatctgac 162  Q
     | | |||||| | ||||||||| ||||    
T  34796880 aaaattcaaacatgtttaatgatatgac 34796907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 1132223 - 1132154
Alignment:
Q  109 tgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattga 178  Q
    |||||| |||||||| |||||||||| | ||||||| |||| ||||||||||||| | |||||| |||||    
T  1132223 tgtgtgtctttagaattagttatgataaaagtcaaatgtttctaatgatctgacggttatgattgattga 1132154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 10997329 - 10997399
Alignment:
Q  108 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattga 178  Q
    |||||| ||||||||| ||| |||||||| ||||  |||||||||||||| | ||||| |||||| |||||    
T  10997329 atgtgtaactttagaaatagatatgattaaagtcttacgtttttaatgatataacgattatgattgattga 10997399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 18966004 - 18966057
Alignment:
Q  118 ttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgat 171  Q
    |||||| |||||| ||||| |||||||| ||||||||||| ||||||| |||||    
T  18966004 ttagaattagttacgattaaagtcaaacatttttaatgatatgacgattatgat 18966057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 48183765 - 48183708
Alignment:
Q  107 catgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgat 165  Q
    |||||||||||||||||||||| ||| | ||  |||||||||||| |||||||||||||    
T  48183765 catgtgtgactttagaagtagtcatgttgactttcaaacgttttt-atgatctgacgat 48183708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 48553069 - 48553131
Alignment:
Q  92 caaatcacaaccaaccatgtgtgactttagaagtagttatgattacagtcaaacgtttttaat 154  Q
    |||||||||| ||| ||| |||||||||||||||  ||||||||| | ||||| |||||||||    
T  48553069 caaatcacaatcaatcatatgtgactttagaagtttttatgattaaattcaaatgtttttaat 48553131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 38900055 - 38900006
Alignment:
Q  108 atgtgtgactttagaagtagttatgattacagtcaaacgtttttaatgat 157  Q
    ||||||||||||| ||||||||| |||   ||||||||||||||||||||    
T  38900055 atgtgtgactttaaaagtagttaggatacaagtcaaacgtttttaatgat 38900006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 43220827 - 43220872
Alignment:
Q  113 tgactttagaagtagttatgattacagtcaaacgtttttaatgatc 158  Q
    |||||||||||||  ||||||||| ||||||||||||||| |||||    
T  43220827 tgactttagaagtgattatgattaaagtcaaacgtttttattgatc 43220872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 44009252 - 44009323
Alignment:
Q  94 aatcacaaccaaccatgtgtg--actttagaagtagttatgattacagtcaaacgtttttaatgatctgacg 163  Q
    |||||||||||| ||||||||  ||||||  | |||| ||||||| ||||||| |||||||||||| |||||    
T  44009252 aatcacaaccaatcatgtgtgtcactttaatattagtgatgattaaagtcaaatgtttttaatgatttgacg 44009323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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