View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_180 (Length: 252)
Name: NF6872A_low_180
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_180 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 8705415 - 8705652
Alignment:
| Q |
3 |
tggtgttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttacattaaaggctttaaatgagtttatt |
102 |
Q |
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| T |
8705415 |
tggtgttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttacaataaaggctttaaatgagtttatt |
8705514 |
T |
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| Q |
103 |
tgagtttttatttattcatttaaatgagtatgacaaaacatgagtttatccaggatttaataattttcctctctgattggctgtcctgtaatttgatgtt |
202 |
Q |
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| T |
8705515 |
tgagtttttatttatttatttaaatgagtatgacaaaacatgagtttatccaggatttaataattttcctctctgattggctgttctgtaatttgatgtt |
8705614 |
T |
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| Q |
203 |
tattggattcattgtttgaaattttgaactttgaaccc |
240 |
Q |
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| T |
8705615 |
tattggattcattgtttgaaattttgaactttgaaccc |
8705652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 14372312 - 14372181
Alignment:
| Q |
3 |
tggtgttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttacattaaaggctttaaatgagtttatt |
102 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||||||||||||| |
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| T |
14372312 |
tggtgttaaaagcagccgggtgattcatgaatatcatgataccacctttgaagat-accaggtttgttttgttacaataaaggttttaaatgagtttatt |
14372214 |
T |
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| Q |
103 |
tgagtttttatttattcatttaaatgagtatga |
135 |
Q |
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| T |
14372213 |
tgagttattatttatttatttaaatgagtatga |
14372181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 8691135 - 8691210
Alignment:
| Q |
3 |
tggtgttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttaca |
78 |
Q |
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| T |
8691135 |
tggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttaca |
8691210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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