View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_182 (Length: 251)
Name: NF6872A_low_182
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_182 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 22 - 248
Target Start/End: Complemental strand, 1831845 - 1831618
Alignment:
| Q |
22 |
agggtcaactagctccttatcttcattctttacacacctaaggc-cacttcagatggtgtagatgcaggattgaagcccatcatgttgaatctctttgaa |
120 |
Q |
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| T |
1831845 |
agggtcaactagctcttcatcttcattctttacaagcttaagattcacttcagatggtgtagatgcaggattgaagcccatcatgttgaatctctttaaa |
1831746 |
T |
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| Q |
121 |
atatttgtagcatatttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatct |
220 |
Q |
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| T |
1831745 |
atatttgtagcatatttcttctggtgcatcactaaacattctgaagttttagtgaattccattccagggaaatatgttaactttcccaaatcagtcatct |
1831646 |
T |
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| Q |
221 |
caaattctctcatcatttgtcttttgaa |
248 |
Q |
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|||||||| ||||||||||||||||||| |
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| T |
1831645 |
caaattctgtcatcatttgtcttttgaa |
1831618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 248
Target Start/End: Original strand, 15490481 - 15490592
Alignment:
| Q |
137 |
tcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatctcaaattctctcatcat |
236 |
Q |
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| T |
15490481 |
tcttctgatgcatccctaaaccttttaaagtttaattgaattccatttcaaggaagtatattaactttcccaaatcagccatatcaaattctctcatcat |
15490580 |
T |
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| Q |
237 |
ttgtcttttgaa |
248 |
Q |
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| T |
15490581 |
ttgtcttatgaa |
15490592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 248
Target Start/End: Original strand, 16944109 - 16944223
Alignment:
| Q |
134 |
atttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatctcaaattctctcat |
233 |
Q |
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| T |
16944109 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
16944208 |
T |
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| Q |
234 |
catttgtcttttgaa |
248 |
Q |
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| T |
16944209 |
catttgtcttttgaa |
16944223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 248
Target Start/End: Original strand, 17014774 - 17014888
Alignment:
| Q |
134 |
atttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatctcaaattctctcat |
233 |
Q |
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| T |
17014774 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
17014873 |
T |
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| Q |
234 |
catttgtcttttgaa |
248 |
Q |
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| T |
17014874 |
catttgtcttttgaa |
17014888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 248
Target Start/End: Complemental strand, 9817073 - 9816931
Alignment:
| Q |
106 |
ttgaatctctttgaaatatttgtagcatatttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaaggaaatattttaactttc |
205 |
Q |
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||||||||||| |||||| | | ||||||||||||| ||||| |||||| | | ||| |||||||||||||| || |||| ||||||| ||||| ||| |
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| T |
9817073 |
ttgaatctcttcaaaatatctattgcatatttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaccttc |
9816974 |
T |
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| Q |
206 |
ccaaatcttccatctcaaattctctcatcatttgtcttttgaa |
248 |
Q |
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| T |
9816973 |
ccaaaccagtcatgtcaaactctttcatcatttgtcttttgaa |
9816931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 206
Target Start/End: Complemental strand, 30065339 - 30065210
Alignment:
| Q |
77 |
gtgtagatgcaggattgaagcccatcatgttgaatctctttgaaatatttgtagcatatttcttctggtgcaccactaaacattatgaagttttagtgaa |
176 |
Q |
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||||||||||||||||| || || ||||||||| ||||| ||||| | |||||| |||||||| ||| |||| || || |||||||||||||| |
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| T |
30065339 |
gtgtagatgcaggattgcagttcaacatgttgaacctcttgagaatatcagaagcatacttcttctgatgcttaactagaccttcagaagttttagtgaa |
30065240 |
T |
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| Q |
177 |
ttccatcccaaggaaatattttaactttcc |
206 |
Q |
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|||||| |||||||| ||| |||||||||| |
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| T |
30065239 |
ttccataccaaggaagtatgttaactttcc |
30065210 |
T |
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