View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_186 (Length: 250)
Name: NF6872A_low_186
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_186 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 31658979 - 31658744
Alignment:
| Q |
15 |
atggacatcacacttgcaaaagttatttgcattcagatataaatttggaatccattgtgtcatcaaatgactcttctatattactcagttttgataacaa |
114 |
Q |
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| T |
31658979 |
atggccatcacacttgcaaaagttatttgcattcagatataaatttggaatccattttgtcatcaaatgactcttctatattacttagttttgataacaa |
31658880 |
T |
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| Q |
115 |
cattccaattaaagaagaaaactcgtttccaccatcaccattgccatttcttgcatctacaatagaggatcctaaggaagagattcatgatgattattct |
214 |
Q |
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| T |
31658879 |
cattccaattaaagaagaaaactcgtttccaccatcaccattgccatttcttgcatctacaaaagaggatcctaaggaagagattcatgatgattattct |
31658780 |
T |
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| Q |
215 |
tctcaaaatcaattgttctcatcagataacctcata |
250 |
Q |
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| T |
31658779 |
tctcaaaatcaattgttctcatcagataacctcata |
31658744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 235
Target Start/End: Original strand, 31650298 - 31650457
Alignment:
| Q |
82 |
tgactcttctatattactcagttttgataa---caacattccaattaaagaagaaaactcgtttccaccatcacc---attgccatttcttgcatctaca |
175 |
Q |
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| T |
31650298 |
tgactcttcaatattacttagtttcgataataacaacatttcaaataaacaagaatatccatttcgaccatcaccaccattgccacttcttgcatctaca |
31650397 |
T |
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| Q |
176 |
atagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaattgttctca |
235 |
Q |
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| T |
31650398 |
aaaggagatcccaaggaagagatacatcatgatcattttcctcaaaaccaattgttctca |
31650457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 31657244 - 31657342
Alignment:
| Q |
20 |
catcacacttgcaaaagttatttgcattcagatataaatttggaatccattgtgtcatcaaatgactcttctatattactcagttttgataacaacatt |
118 |
Q |
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| T |
31657244 |
catcacacttgcaaaagctcttaccattcagacataaaattggaatccattttgtgctacgatgactcttctatattacttagtttcgataacaacatt |
31657342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 31657390 - 31657434
Alignment:
| Q |
154 |
attgccatttcttgcatctacaatagaggatcctaaggaagagat |
198 |
Q |
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| T |
31657390 |
attgccacttcttgcatctacaaaagaggaacccaaggaagagat |
31657434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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