View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_191 (Length: 250)
Name: NF6872A_low_191
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_191 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 87358 - 87599
Alignment:
| Q |
5 |
actgatatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
104 |
Q |
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| T |
87358 |
actgagatgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
87457 |
T |
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| Q |
105 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
204 |
Q |
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| T |
87458 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
87557 |
T |
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| Q |
205 |
tccgtgtagcgttgaagctataagatatatggctaatcatga |
246 |
Q |
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| T |
87558 |
tccatgtagagttgaagctataagatatatggctaatcatga |
87599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 95388 - 95615
Alignment:
| Q |
5 |
actgatatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
104 |
Q |
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| T |
95388 |
actgagatgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgc |
95473 |
T |
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| Q |
105 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
204 |
Q |
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| T |
95474 |
cagaagttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcat |
95573 |
T |
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| Q |
205 |
tccgtgtagcgttgaagctataagatatatggctaatcatga |
246 |
Q |
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| T |
95574 |
tccatgtagagttgaagatataagatatatggctaatcatga |
95615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 5 - 246
Target Start/End: Complemental strand, 40878925 - 40878684
Alignment:
| Q |
5 |
actgatatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
104 |
Q |
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| T |
40878925 |
actgagatgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
40878826 |
T |
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| Q |
105 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878825 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
40878726 |
T |
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| Q |
205 |
tccgtgtagcgttgaagctataagatatatggctaatcatga |
246 |
Q |
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| T |
40878725 |
tccatgtagagttgaagctataagatatatggctaatcatga |
40878684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 5 - 246
Target Start/End: Complemental strand, 40870894 - 40870667
Alignment:
| Q |
5 |
actgatatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
104 |
Q |
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| T |
40870894 |
actgagatgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgc |
40870809 |
T |
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| Q |
105 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
204 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| |
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| T |
40870808 |
cagaagttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcat |
40870709 |
T |
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| Q |
205 |
tccgtgtagcgttgaagctataagatatatggctaatcatga |
246 |
Q |
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| T |
40870708 |
tccatgtagagttgaagatataagatatatggctaatcatga |
40870667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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