View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6872A_low_197 (Length: 249)

Name: NF6872A_low_197
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6872A_low_197
NF6872A_low_197
[»] chr5 (9 HSPs)
chr5 (19-238)||(26099226-26099445)
chr5 (129-217)||(25224928-25225016)
chr5 (129-217)||(25289084-25289172)
chr5 (129-217)||(25728232-25728320)
chr5 (24-73)||(25224814-25224863)
chr5 (24-73)||(25288970-25289019)
chr5 (138-211)||(25222582-25222655)
chr5 (138-211)||(25286738-25286811)
chr5 (24-73)||(25728385-25728434)
[»] chr1 (1 HSPs)
chr1 (129-217)||(25618044-25618132)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 26099445 - 26099226
Alignment:
Q  19 cctcagtcaagattccgaagatacattctaaagtttactacttcccgcaaggtcacttaaaacatgtctcaactcacacaatcatcacccttcttcattg 118  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  26099445 cctcagtcaagattccgaagctacattctaaagtttactacttcccacaaggtcacttaaaacatgtctcccctcacacaatcatcacccttcttcattg 26099346  T
Q  119 ttatcctccttccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaacg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| |    
T  26099345 ttatcctccttccatttcctgcatcatctcagccgttgatctccttgttgatcctcacacagatgaagtctttgccaaactgctcctcactcccgtaatg 26099246  T
Q  219 gaaggccatggccatgaaca 238  Q
    || ||||||||||| |||||    
T  26099245 gatggccatggccacgaaca 26099226  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 25224928 - 25225016
Alignment:
Q  129 tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac 217  Q
    |||||| | |||||| ||||  ||||||||||| |||||||||||||| | || || || ||||||||||| ||||| |||||||||||    
T  25224928 tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac 25225016  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 25289084 - 25289172
Alignment:
Q  129 tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac 217  Q
    |||||| | |||||| ||||  ||||||||||| |||||||||||||| | || || || ||||||||||| ||||| |||||||||||    
T  25289084 tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac 25289172  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 25728320 - 25728232
Alignment:
Q  129 tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac 217  Q
    |||||| | |||||| ||||  ||||||||||| |||||||||||||| | || || || ||||||||||| ||||| |||||||||||    
T  25728320 tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac 25728232  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 25224814 - 25224863
Alignment:
Q  24 gtcaagattccgaagatacattctaaagtttactacttcccgcaaggtca 73  Q
    ||||||||||||||||| || |||||||||||||||||||| | ||||||    
T  25224814 gtcaagattccgaagattcactctaaagtttactacttcccacgaggtca 25224863  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 25288970 - 25289019
Alignment:
Q  24 gtcaagattccgaagatacattctaaagtttactacttcccgcaaggtca 73  Q
    ||||||||||||||||| || |||||||||||||||||||| | ||||||    
T  25288970 gtcaagattccgaagattcactctaaagtttactacttcccacgaggtca 25289019  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 25222655 - 25222582
Alignment:
Q  138 tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcc 211  Q
    |||||||| ||||||||| ||||| |||||||| ||| | | || || ||||| |||||||| |||||||||||    
T  25222655 tgcatcatttcagccgttaatctctttgttgatgctctcactgacgaggttttcgccaaactgctcctcactcc 25222582  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 25286811 - 25286738
Alignment:
Q  138 tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcc 211  Q
    |||||||| ||||||||| ||||| |||||||| ||| | | || || ||||| |||||||| |||||||||||    
T  25286811 tgcatcatttcagccgttaatctctttgttgatgctctcactgacgaggttttcgccaaactgctcctcactcc 25286738  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 25728434 - 25728385
Alignment:
Q  24 gtcaagattccgaagatacattctaaagtttactacttcccgcaaggtca 73  Q
    ||||||||||| ||||| || |||||||||||||||||||| | ||||||    
T  25728434 gtcaagattccaaagattcactctaaagtttactacttcccacgaggtca 25728385  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 25618044 - 25618132
Alignment:
Q  129 tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac 217  Q
    |||||| | |||||||||||  |||| |||||||||| ||||||| || | |||||||| || |||||||| |||||||||||||||||    
T  25618044 tccattccgtgcatcatctccaccgtcgatctccttgctgatccttacactgatgaagtcttcgccaaactgctcctcactcccgtaac 25618132  T

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