View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_2 (Length: 688)
Name: NF6872A_low_2
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 135 - 680
Target Start/End: Original strand, 5898103 - 5898630
Alignment:
| Q |
135 |
atattgtacattaatttcattgcaaatcttcaataaaattgtatgagattgtatatcccctaatctaactttaaccttcaaagacaaatgcaaattgaaa |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||| || |
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| T |
5898103 |
atattgtacattaatttcattgcaaatcttcaataaaattgtataagattgtatatcccctaatctaactttaatcttcaaagacaaatgccaattgcaa |
5898202 |
T |
|
| Q |
235 |
attctgaattcataaattgattccttgcatgtcttaagtctttccttcatctcattctagtacaaagtttagttgttacacagcatttcaaccagaaaat |
334 |
Q |
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| T |
5898203 |
attctgaattcataaattgattccttgcatgtcttaagtctttccttcatctcatg-----------------tgttacacagcatttcaaccagaaaa- |
5898284 |
T |
|
| Q |
335 |
atattgctccaagaatttttagacttgaatcctagacaattaaccatgtttagcatctaataagtccaactaaaagttaatctattgagtaaaccagaac |
434 |
Q |
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| T |
5898285 |
atattgctccaagaatttttagacttgaatcatagacaattaaccatgtttagcatctaataagtccaactaatagttaatctattgagtaaaccagaac |
5898384 |
T |
|
| Q |
435 |
aagaaaggtacttatctacaatcacaaaaatcattttagcttttccttgatgaccattgaccaaacaggttcaaaggttaaggaaaaaattaatggtgtt |
534 |
Q |
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| T |
5898385 |
aagaaaggtacttatctacaatcacaaaaatcattttagcttttccttgatgaccattgaccaaacaggttcaaaggttaaggaaaaaattaatggtgtt |
5898484 |
T |
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| Q |
535 |
aacatcctaaatcaaggatagctacattcgttagaactatgaccataagaatctgttgcagcaactgcagcaagtcggcctgcgtcattcttcaaactcc |
634 |
Q |
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| T |
5898485 |
aacatcctaaatcaaggatagctacattcgttggaactatgaccataagaatctgttgcagcaactgcagcaagtcggcctgcgtcattcttcaaactcc |
5898584 |
T |
|
| Q |
635 |
ctcattaacaattctcctgatataagcagctctggttcttcatctc |
680 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||| |||| |
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| T |
5898585 |
ctcattaacaattcttctgatctaagcagctctggttcttcttctc |
5898630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 135 - 675
Target Start/End: Original strand, 5859909 - 5860445
Alignment:
| Q |
135 |
atattgtacattaatttcattgcaaatcttcaataaaattgtatgagattgtatatcccctaatctaactttaaccttcaaagacaaatgcaaattgaaa |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || || | |
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| T |
5859909 |
atattgtacattaatttcattgcaaatcttcaataaaattgtatgagattgtacatcccctcatctaactttaaccttcaaagacaaatgccaagtgcga |
5860008 |
T |
|
| Q |
235 |
attctgaattcataaattgattccttgcatgtcttaagtctttccttcatctcattctagtacaaagtttagttgttacacagcatttcaaccagaaaat |
334 |
Q |
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| T |
5860009 |
attctaaattcataagttgattccttgcatgttt--agtctttccttcatttcattctagtacaaagtttagctgtttcacagcatttcaaccagaaaaa |
5860106 |
T |
|
| Q |
335 |
atattgctccaagaatttttagacttgaatcctagacaattaaccatgtttagcatctaataagtccaactaaaagttaatctattgagtaaaccagaac |
434 |
Q |
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||| ||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
5860107 |
ataatgctccaagaatttttagactagaatcatagacaattaacattgtttagcatctaataagtccaactaaaagtta-tctattgattaaaccagaac |
5860205 |
T |
|
| Q |
435 |
aagaaaggtacttatctacaatcacaaaaatcattttagcttttccttgatgaccattgaccaaacaggttcaaaggttaaggaaaaaattaatggtgtt |
534 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
5860206 |
tagaaaggtagttatctacaatcacaaaa-tcattttagcttttccttgatgatcattgaccaaactggttcaaaggttaaggaaaaaatgaatggtgtt |
5860304 |
T |
|
| Q |
535 |
aacatcctaaatcaaggatagctacattcgttagaactatgaccataagaatctgttgcagcaactgcagcaagtcggcctgcgtcattcttcaaactcc |
634 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
5860305 |
aacatcctaaatcaaggatagctacattcgttggagctatgaccataagaatctgttgcagcaactgtagcaagtcggcctgtgtcattcttcaaactcc |
5860404 |
T |
|
| Q |
635 |
ctcattaacaattctcctgatataagcagctctggttcttc |
675 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5860405 |
ctcattaacaattctcctgatctaagcagctctggttcttc |
5860445 |
T |
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Back To:
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