View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_200 (Length: 249)
Name: NF6872A_low_200
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_200 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 39182325 - 39182553
Alignment:
| Q |
7 |
cagatcagtagtaatattcaacttcgccggctgcaagaaaagaaaagaaaatataggatgcattaaaacttgtgtatccattgcaaccaaacacgagtga |
106 |
Q |
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| T |
39182325 |
cagatcagtagtaatattcaacttcgccggctgcaaaaaaaaaaaaaaaaatataggatgcattaaaacttgtgtatccattgcaaccaaacacaagtga |
39182424 |
T |
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| Q |
107 |
aagatgtttgtttaaagcagctttggctgtaagtcattgctatttcatctactagaaaatcaaagaattgaaacctataagaactcaaaagtcttgtgga |
206 |
Q |
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| T |
39182425 |
aagatgtttgtttaaagcagctttggctgtaagtc-ttgctatttcatctactagaaaatcaaagaattgaaacctataagaactcaaaagtcttgtgaa |
39182523 |
T |
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| Q |
207 |
gtctaacctccaagatttttgccgcgattt |
236 |
Q |
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| T |
39182524 |
gtctaacctccaagatttttgccgcgattt |
39182553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 81 - 236
Target Start/End: Complemental strand, 2103243 - 2103086
Alignment:
| Q |
81 |
tatccattgcaaccaaacacgagtgaaagatgtttgtttaaagcagctttggctgtaagtcattgctatttcatctactagaaaatcaaagaattgaaac |
180 |
Q |
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| T |
2103243 |
tatccattgcaaccaaacacaagtgaaagatgtttttttaaagcaactttggctgtaagtcattgctatttcatctactaggaaatcaaagaattgaaac |
2103144 |
T |
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| Q |
181 |
ctataagaactc--aaaagtcttgtggagtctaacctccaagatttttgccgcgattt |
236 |
Q |
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| T |
2103143 |
caataagaactcagaaaagtcttgtgaagtctaacctccaagatttttgccacgattt |
2103086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 2103370 - 2103302
Alignment:
| Q |
10 |
atcagtagtaatattcaacttcgccggctgcaagaaaagaaaagaaaatataggatgcattaaaacttgtgt |
81 |
Q |
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| T |
2103370 |
atcagtagtaatattcaacttcgccggctgca--aaaagaaaa-aaaatatagaatgcattaaaacttgtgt |
2103302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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