View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6872A_low_201 (Length: 249)

Name: NF6872A_low_201
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6872A_low_201
NF6872A_low_201
[»] chr1 (8 HSPs)
chr1 (6-249)||(51052372-51052618)
chr1 (6-249)||(11909107-11909353)
chr1 (6-249)||(35540941-35541187)
chr1 (6-249)||(6050495-6050741)
chr1 (37-133)||(16917842-16917938)
chr1 (38-119)||(47623111-47623192)
chr1 (37-119)||(43388392-43388474)
chr1 (37-200)||(37191243-37191406)
[»] chr5 (22 HSPs)
chr5 (6-249)||(12825091-12825337)
chr5 (6-210)||(30732316-30732520)
chr5 (6-249)||(27117163-27117409)
chr5 (6-249)||(42513612-42513858)
chr5 (90-249)||(12820035-12820197)
chr5 (7-210)||(23238318-23238521)
chr5 (6-200)||(28535677-28535871)
chr5 (22-210)||(8227960-8228148)
chr5 (6-196)||(35983793-35983983)
chr5 (37-147)||(19255155-19255265)
chr5 (14-200)||(42928075-42928261)
chr5 (6-143)||(31641513-31641649)
chr5 (37-133)||(25857457-25857553)
chr5 (37-123)||(27767063-27767149)
chr5 (38-119)||(10776789-10776870)
chr5 (37-133)||(8300215-8300311)
chr5 (146-249)||(3418675-3418781)
chr5 (37-119)||(33385407-33385489)
chr5 (37-173)||(18359125-18359260)
chr5 (27-143)||(33169659-33169775)
chr5 (39-147)||(27795480-27795588)
chr5 (14-119)||(26072917-26073022)
[»] chr2 (9 HSPs)
chr2 (6-249)||(4552061-4552307)
chr2 (37-147)||(41207013-41207123)
chr2 (37-143)||(15917655-15917761)
chr2 (39-185)||(28252679-28252825)
chr2 (37-123)||(12645557-12645643)
chr2 (37-143)||(17764995-17765101)
chr2 (39-158)||(14439738-14439857)
chr2 (37-140)||(40176672-40176775)
chr2 (37-146)||(38604407-38604516)
[»] chr3 (21 HSPs)
chr3 (6-249)||(2364169-2364415)
chr3 (6-249)||(19920231-19920477)
chr3 (6-210)||(7312710-7312914)
chr3 (6-249)||(10323573-10323819)
chr3 (6-210)||(34332817-34333021)
chr3 (6-200)||(40930530-40930724)
chr3 (36-123)||(7032339-7032426)
chr3 (37-119)||(29523778-29523860)
chr3 (37-119)||(11203844-11203926)
chr3 (38-119)||(33496572-33496653)
chr3 (37-119)||(12342259-12342340)
chr3 (37-143)||(26771022-26771128)
chr3 (50-133)||(7031063-7031146)
chr3 (37-158)||(35214404-35214525)
chr3 (37-119)||(36801108-36801190)
chr3 (27-136)||(963186-963295)
chr3 (27-143)||(2755843-2755959)
chr3 (37-161)||(19890661-19890785)
chr3 (50-140)||(16178952-16179042)
chr3 (27-143)||(3140853-3140969)
chr3 (23-143)||(15312584-15312704)
[»] scaffold0034 (1 HSPs)
scaffold0034 (6-249)||(105845-106091)
[»] chr8 (18 HSPs)
chr8 (6-249)||(7924278-7924524)
chr8 (6-249)||(8299695-8299941)
chr8 (6-210)||(172037-172241)
chr8 (6-210)||(13396322-13396526)
chr8 (16-210)||(32266498-32266692)
chr8 (6-210)||(41665371-41665575)
chr8 (6-200)||(9922545-9922739)
chr8 (37-133)||(20824307-20824403)
chr8 (37-200)||(13200067-13200230)
chr8 (37-119)||(17699507-17699589)
chr8 (37-158)||(2170328-2170449)
chr8 (37-119)||(37434157-37434239)
chr8 (52-137)||(34137011-34137096)
chr8 (176-249)||(20496976-20497052)
chr8 (72-210)||(2529820-2529958)
chr8 (39-147)||(13879522-13879630)
chr8 (52-119)||(43270475-43270542)
chr8 (37-147)||(25090384-25090494)
[»] chr7 (11 HSPs)
chr7 (6-249)||(4938130-4938376)
chr7 (6-210)||(11277254-11277458)
chr7 (6-210)||(47876917-47877121)
chr7 (6-210)||(29967909-29968113)
chr7 (6-179)||(235439-235614)
chr7 (6-201)||(37919487-37919682)
chr7 (6-210)||(17720569-17720773)
chr7 (120-249)||(31177421-31177553)
chr7 (37-200)||(25619403-25619566)
chr7 (37-119)||(18532653-18532735)
chr7 (37-159)||(37254743-37254865)
[»] chr4 (16 HSPs)
chr4 (6-249)||(23642593-23642839)
chr4 (6-249)||(47418696-47418942)
chr4 (6-249)||(13270893-13271139)
chr4 (6-249)||(47685897-47686143)
chr4 (6-210)||(15740155-15740359)
chr4 (6-210)||(1828542-1828746)
chr4 (6-210)||(19755198-19755405)
chr4 (6-210)||(19784401-19784608)
chr4 (6-200)||(7403857-7404051)
chr4 (37-140)||(55725719-55725822)
chr4 (37-119)||(12697838-12697920)
chr4 (37-119)||(45472742-45472824)
chr4 (155-249)||(159842-159939)
chr4 (39-137)||(11587233-11587331)
chr4 (37-118)||(8361126-8361207)
chr4 (37-119)||(20002750-20002832)
[»] scaffold0369 (1 HSPs)
scaffold0369 (6-249)||(11207-11453)
[»] chr6 (14 HSPs)
chr6 (29-249)||(12734017-12734240)
chr6 (6-210)||(2553571-2553775)
chr6 (6-200)||(18651236-18651430)
chr6 (6-201)||(24767426-24767621)
chr6 (6-123)||(21168220-21168337)
chr6 (37-133)||(17579114-17579210)
chr6 (37-133)||(17573688-17573784)
chr6 (37-119)||(17606367-17606449)
chr6 (37-123)||(21630140-21630226)
chr6 (39-176)||(14373026-14373163)
chr6 (37-119)||(10577282-10577364)
chr6 (52-137)||(15958861-15958946)
chr6 (37-186)||(20883066-20883215)
chr6 (27-136)||(13937708-13937817)
[»] scaffold0472 (1 HSPs)
scaffold0472 (6-210)||(3186-3390)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 51052618 - 51052372
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51052618 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 51052519  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51052518 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 51052419  T
Q  206 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    |||||          ||||||||||||||||||||||||||||||||    
T  51052418 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtg 51052372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 11909107 - 11909353
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11909107 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatcattgcttggcgacttctgagg 11909206  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11909207 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggctatgtgtttctggatgtgggattgtcgaagatgtttctc 11909306  T
Q  206 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    |||||          ||||||||||||||||||||||||||||||||    
T  11909307 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtg 11909353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 35541187 - 35540941
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  35541187 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 35541088  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| || ||||| ||| |||||||||||||||||||||||||| |||    
T  35541087 gatcggttacccacaaaacataatttggcaaatcgtggcattctatctgtggaggaacgattatgcgttgctggatgtgggattgtcgaagatgttactc 35540988  T
Q  206 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    |||||          ||||||||||||||||||||||||||||||||    
T  35540987 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtg 35540941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 6050741 - 6050495
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  6050741 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 6050642  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || ||| |||||||||||||||||||||||||| |||    
T  6050641 gatcggttacctacaaaacttaatttggcaaattgtggcattctatctgtggaggagcggttctgcgttgctggatgtgggattgtcgaagatgttactc 6050542  T
Q  206 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    |||||          ||||||||||||||||||||||||||||||||    
T  6050541 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtg 6050495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 16917842 - 16917938
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 133  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| |||||||| |||  ||||||||    
T  16917842 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 16917938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 47623111 - 47623192
Alignment:
Q  38 atatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 119  Q
    ||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| || ||||||||    
T  47623111 atatggaattaatttggcataaacaggtacctctcaaagtatctattcttgcttggcggcttttgagggaccgcttacctac 47623192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 43388474 - 43388392
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 119  Q
    |||||||| ||| |||||||||||||||||||| | ||||| |||||||||||||||||| |  |||||||||| ||||||||    
T  43388474 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgattgttgagggatcgtttacctac 43388392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 200
Target Start/End: Original strand, 37191243 - 37191406
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 136  Q
    |||||||| ||| | |||||||||| ||||| | | ||||| | ||||||||||||||| ||  |||| ||||| |||||||| |||   || ||||||     
T  37191243 aatatggagttaatctggcataaactggttcatttaaaagtttatatccttgcttggcggctgttgagagatcgattacctactaaatccaacttggcag 37191342  T
Q  137 atcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 200  Q
    |||||||||||  || ||||||||| || || |||||  | |||||||||  ||| ||||||||    
T  37191343 atcgtggcattacatctgtggaggatcgattttgtgtcacgggatgtgggcatgttgaagatgt 37191406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 12825337 - 12825091
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  12825337 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaagttcctctcaaagtatgtatccttgcttggcgacttctgagg 12825238  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12825237 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 12825138  T
Q  206 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    |||||          ||||||||||||||||||||||||||||||||    
T  12825137 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtg 12825091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 30732316 - 30732520
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30732316 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatctttgcttggcgacttctgagg 30732415  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30732416 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 30732515  T
Q  206 atttg 210  Q
    |||||    
T  30732516 atttg 30732520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 27117163 - 27117409
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27117163 gacatcacaggagcagatccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 27117262  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    || |||||||| |||||||||||||||| ||| ||||||||||||| | ||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  27117263 gaccggttacccacaaaacttaatttggtaaaccgtggcattctatctatggaggagcggttatgtgtttctggctgtgggaatgtcgaagatgtttctc 27117362  T
Q  206 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    |||||          ||||||||||||| ||||||||||||||||||    
T  27117363 atttgtttttgtcttgtgcaacttttggagcattatggccgatggtg 27117409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 42513858 - 42513612
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  42513858 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 42513759  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |||    
T  42513758 gatcggttacctacaaaacttaatttggcaaatcgtgacattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 42513659  T
Q  206 a---tttgnnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    |   |||        ||||||||||||||||||||||||||||||||    
T  42513658 atttttttttgtcttgtgcaacttttggtgcattatggccgatggtg 42513612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 90 - 249
Target Start/End: Original strand, 12820035 - 12820197
Alignment:
Q  90 ttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggatt 189  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12820035 ttggcgacttatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggatt 12820134  T
Q  190 gtcgaagatgtttctcatttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    ||||||||||| |||||||||          ||||||||||||||||||||||||||||||||    
T  12820135 gtcgaagatgtctctcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtg 12820197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 23238521 - 23238318
Alignment:
Q  7 acatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgaggg 106  Q
    |||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||||||| ||||| |||| |    
T  23238521 acatcacaggagcaaccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtttctatccttgcttggagacttttgagag 23238422  T
Q  107 atcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctca 206  Q
    ||||||||||||| |||  |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||||||||  || |||||||||  |||    
T  23238421 atcggttacctacgaaaagtaatttggcaaaccgtggcattttagctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatca 23238322  T
Q  207 tttg 210  Q
    ||||    
T  23238321 tttg 23238318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 6 - 200
Target Start/End: Original strand, 28535677 - 28535871
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| |||||||||| |||||||| || || ||||| ||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  28535677 gacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcatacacaggttcctctcaaagtttctatccttgcttggcgacttctgagg 28535776  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 200  Q
    ||||||||||||||||||  |||||||||||| ||||||||| ||  | |||||| || | | ||||||||||| ||||||| ||| ||||||||    
T  28535777 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagatgtgtgtttctggttgtgggaatgtagaagatgt 28535871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 8228148 - 8227960
Alignment:
Q  22 ccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaa 121  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| |    
T  8228148 ccccagttacaccataatatggagttaatttgacataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctacga 8228049  T
Q  122 aacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctcatttg 210  Q
    ||  |||||||||||| |||| |||| ||  | |||||| |||||| |||||||||||||||| ||  || |||||||||  |||||||    
T  8228048 aaagtaatttggcaaaccgtgacattttacctttggaggcgcggttgtgtgtttctggatgtgagaacgttgaagatgttaatcatttg 8227960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 6 - 196
Target Start/End: Original strand, 35983793 - 35983983
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| |||||||||| |||||||| || || ||||| ||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  35983793 gacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcttacacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 35983892  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaag 196  Q
     |||||||||||||||||  |||||||||||| | || |||| ||  | |||||| |||||| ||||||| ||| ||||||| ||| ||||    
T  35983893 aatcggttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttttggttgtgggaatgtagaag 35983983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 147
Target Start/End: Original strand, 19255155 - 19255265
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 136  Q
    |||||||| ||| |||||||||||||| || ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||  |||||||||||    
T  19255155 aatatggagttaatttggcataaacagatttctctcaaagtatctatccttgcttggcggtttctgagggatcggttacctacaaaaaataatttggcaa 19255254  T
Q  137 atcgtggcatt 147  Q
    || ||||||||    
T  19255255 attgtggcatt 19255265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 42928261 - 42928075
Alignment:
Q  14 aggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggtt 113  Q
    |||| |||||||||||||| |  |||||||| ||| ||||| |||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||    
T  42928261 aggaacagccccagttacatccaaatatggagttaatttggtataaacaggttcctctcaaagtctctatccttgtttggcggcttctgagggatcggtt 42928162  T
Q  114 acctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 200  Q
    | ||||||||  ||||||| ||||  |||||||| ||    |||||| |||||| ||||| |||||||| ||||  || ||||||||    
T  42928161 aactacaaaaaataatttgacaaactgtggcattttacccttggaggtgcggttgtgtgtctctggatgcgggaacgttgaagatgt 42928075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 31641649 - 31641513
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| |||||||||| || ||||| || || ||||| ||| ||||||||| |||||||||||| ||||| ||||||||||| ||| |||| ||||||    
T  31641649 gacatcacaggagcagcctcacttacatcaaaacatggagttaatttggcatacacaggttcctct-aaagtttctatccttgcatggagactactgagg 31641551  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtgg 143  Q
    ||||||||||||||||||  |||||||||||| |||||    
T  31641550 gatcggttacctacaaaaaataatttggcaaaccgtgg 31641513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 25857457 - 25857553
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 133  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| |||||||| |||  ||||||||    
T  25857457 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 25857553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 27767149 - 27767063
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 123  Q
    |||||||| ||| |||||||||||||||||||| | ||||| | ||||||||||||||||||  |||||||||| ||||||||||||    
T  27767149 aatatggagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctacaaaa 27767063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 10776870 - 10776789
Alignment:
Q  38 atatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 119  Q
    ||||||| ||| |||||||||||||||||||  | ||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  10776870 atatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgagggatcgtttacctac 10776789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 8300215 - 8300311
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 133  Q
    |||||||| ||| |||||||||||||||||||| | ||||| |||||||||| |||||||||  |||||||||| |||||||| |||  ||||||||    
T  8300215 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgagggatcgcttacctactaaatctaatttgg 8300311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 249
Target Start/End: Complemental strand, 3418781 - 3418675
Alignment:
Q  146 ttctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctcatttg---nnnnnnngtgcaacttttggtgcattatggcc 242  Q
    |||||| ||||||||| || ||||| ||| |||||||||||||||||||||||||| ||||||||          |||||||||||||||||||||||||    
T  3418781 ttctatctgtggaggaacgattatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggcc 3418682  T
Q  243 gatggtg 249  Q
    |||||||    
T  3418681 gatggtg 3418675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 33385407 - 33385489
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 119  Q
    |||||||| ||| |||||||||||||||||||  | ||||| ||||||||||||||||||||  |||||||||| ||||||||    
T  33385407 aatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgttgagggatcgtttacctac 33385489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 18359125 - 18359260
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 136  Q
    |||||||| ||| | | |||||||||||||||| | ||||| || ||||||||||||||  |  |||||||||| |||||||| |||   || ||||||     
T  18359125 aatatggagttaatctagcataaacaggttcctttaaaagtttcaatccttgcttggcggttgttgagggatcgtttacctactaaatccaacttggcag 18359224  T
Q  137 atcgtggcattctatatgtggaggagcggttatgtgt 173  Q
    ||||| ||||| ||||||||||||| ||||| |||||    
T  18359225 atcgt-gcattatatatgtggaggatcggttttgtgt 18359260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 33169775 - 33169659
Alignment:
Q  27 gttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaactt 126  Q
    |||||| || |||||||| ||  ||||||| |||||||| ||| | ||||| |||||  ||||||||||  | |||||||| ||||||||||| ||||      
T  33169775 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 33169676  T
Q  127 aatttggcaaatcgtgg 143  Q
    |||||||||| ||||||    
T  33169675 aatttggcaagtcgtgg 33169659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 27795588 - 27795480
Alignment:
Q  39 tatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaat 138  Q
    |||||| ||||| ||||| |||||||| |||||||||||  |  || ||||||||||  |  |||||||||| || ||||| |||   ||||||||||||    
T  27795588 tatggagttagtctggcacaaacaggtacctctcaaagttacagtctttgcttggcggttgttgagggatcgtttgcctactaaagccaatttggcaaat 27795489  T
Q  139 cgtggcatt 147  Q
    |||||||||    
T  27795488 cgtggcatt 27795480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 26073022 - 26072917
Alignment:
Q  14 aggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggtt 113  Q
    |||| |||||||| || || || ||| |||| ||| ||||||||||| | |||||| | |||||  ||||| ||| |||||||||  |||||||||| ||    
T  26073022 aggaacagccccatttgcatcaaaatttggagttaatttggcataaatatgttcctttgaaagtccctatctttgtttggcgactgttgagggatcgatt 26072923  T
Q  114 acctac 119  Q
    ||||||    
T  26072922 acctac 26072917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 4552307 - 4552061
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  4552307 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaataggttcctcttaaagtatctatccttgcttggcgacttctgagg 4552208  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4552207 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaaaatgtttctc 4552108  T
Q  206 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    |||||          |||||||||||||||||||||| |||||||||    
T  4552107 atttgtttttgtcttgtgcaacttttggtgcattatgaccgatggtg 4552061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 41207123 - 41207013
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 136  Q
    |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||    
T  41207123 aatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggcggcttctgagggatcggttacctacaaaaaataatttggcaa 41207024  T
Q  137 atcgtggcatt 147  Q
    |||||||||||    
T  41207023 atcgtggcatt 41207013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 15917761 - 15917655
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 136  Q
    ||||| || ||| ||| ||||||| |||||||||| ||||| | ||||||||||||| |||| ||||||||||| |||||||||||| ||||||||||||    
T  15917761 aatattgagttaatttcgcataaataggttcctctgaaagtctgtatccttgcttggggactgctgagggatcgtttacctacaaaagttaatttggcaa 15917662  T
Q  137 atcgtgg 143  Q
    |||||||    
T  15917661 atcgtgg 15917655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 185
Target Start/End: Complemental strand, 28252825 - 28252679
Alignment:
Q  39 tatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaat 138  Q
    |||||| ||| |||||||||||||||| ||||| ||||||||||| ||||||||||| ||| |||||||||| |||||||| ||    |||||||||||     
T  28252825 tatggaattaatttggcataaacaggtacctctaaaagtatctattcttgcttggcggcttttgagggatcgcttacctacgaagggaaatttggcaaac 28252726  T
Q  139 cgtggcattctatatgtggaggagcggttatgtgtttctggatgtgg 185  Q
    | ||||||| |  || |||||| ||||||||||||||| || |||||    
T  28252725 catggcattattcatatggaggggcggttatgtgtttccggttgtgg 28252679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 12645643 - 12645557
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 123  Q
    |||||||| ||| ||||||||||||||||| |||| ||||| || |||||||||||||| ||  |||||||||| ||||||||||||    
T  12645643 aatatggagttaatttggcataaacaggtttctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaa 12645557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 17764995 - 17765101
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 136  Q
    |||||||| ||| | ||||||||||||| |||||| ||||| ||||| ||||||||||| ||  |||||||||  |||||||| |||   ||||||||||    
T  17764995 aatatggagttaatatggcataaacaggctcctcttaaagtctctattcttgcttggcggctattgagggatcatttacctacgaaagcaaatttggcaa 17765094  T
Q  137 atcgtgg 143  Q
    | |||||    
T  17765095 accgtgg 17765101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 14439857 - 14439738
Alignment:
Q  39 tatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaat 138  Q
    |||||| ||| | |||||||||||||||||| | ||||| |||||| | ||||| |||||  |||||||||| |||||||| |||   ||||||| | |     
T  14439857 tatggagttaatctggcataaacaggttcctttaaaagtttctatcttggcttgacgactgttgagggatcgtttacctactaaatcaaatttggtagaa 14439758  T
Q  139 cgtggcattctatatgtgga 158  Q
    ||||| ||||||| ||||||    
T  14439757 cgtgggattctatctgtgga 14439738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 40176775 - 40176672
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 136  Q
    |||||||| ||||| ||||| |||||||| ||||| ||||| ||  |||||||||||||  |  |||||||||| |||||||| ||| | |||||| |||    
T  40176775 aatatggagttagtctggcacaaacaggtacctctaaaagtttcagtccttgcttggcggttgttgagggatcgtttacctactaaagtcaatttgacaa 40176676  T
Q  137 atcg 140  Q
    ||||    
T  40176675 atcg 40176672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 38604407 - 38604516
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 136  Q
    |||||||| ||| | ||||||||||| || ||||| ||||| || |||||||| ||||  ||  | || ||||| |||||||||| | | |||||||||     
T  38604407 aatatggagttaatctggcataaacaagtacctctaaaagtttcaatccttgcatggctgctgttaagagatcgtttacctacaatagtcaatttggcat 38604506  T
Q  137 atcgtggcat 146  Q
    ||||||||||    
T  38604507 atcgtggcat 38604516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 2364415 - 2364169
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  2364415 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 2364316  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |||    
T  2364315 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 2364216  T
Q  206 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    |||||          ||||||||||||||||||||||||||||||||    
T  2364215 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtg 2364169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 19920231 - 19920477
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19920231 gacatcacaggagaagccccagttacaccatcatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 19920330  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  19920331 gatcggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaagatgcttctc 19920430  T
Q  206 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    |||||          ||| ||||||||||||||||||||||||||||    
T  19920431 atttgtttttgtcttgtgtaacttttggtgcattatggccgatggtg 19920477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 7312914 - 7312710
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||  |||||    
T  7312914 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtacctctcaaagtatctatccttgcttggcgactaatgagg 7312815  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  7312814 gatcggttacctacaaaacttaatttggcaaatcgtggcattctgtctgtggaggagcggctttgtgtttctggatgtgggattgtcgaagatgtttctc 7312715  T
Q  206 atttg 210  Q
    |||||    
T  7312714 atttg 7312710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 10323573 - 10323819
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  10323573 gacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 10323672  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| || ||| ||||||||||| ||| |||||||||||||||||||||||||| |||    
T  10323673 gatcggttacctacaaaacttaatttggcaactcgtggcattctatctggggatgagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 10323772  T
Q  206 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    |||||          ||||||||||||||||||||||||||||||||    
T  10323773 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtg 10323819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 34332817 - 34333021
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  34332817 gacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcaacttctgaga 34332916  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    ||||| ||||||||||||  |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||||||||  || |||||||||  ||    
T  34332917 gatcgattacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatc 34333016  T
Q  206 atttg 210  Q
    |||||    
T  34333017 atttg 34333021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 6 - 200
Target Start/End: Original strand, 40930530 - 40930724
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||| || ||||| || || || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40930530 gacatcacaggagcaacctcagttgcatcaaaacatggagttagtttgacataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagg 40930629  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 200  Q
    ||| ||||||||||||||  |||||||||||| |||||| || ||  | |||||| |||||| ||||||||||| |||||||  |||||||||||    
T  40930630 gattggttacctacaaaaaataatttggcaaaccgtggccttttacctttggaggcgcggttgtgtgtttctggttgtgggaacgtcgaagatgt 40930724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 7032426 - 7032339
Alignment:
Q  36 taatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 123  Q
    |||| |||| || |||||||| |||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||    
T  7032426 taatttggagttggtttggcacaaacaggttcctctcaaaatttctatccttgcatggcgacttctgagggatcggttacctacaaaa 7032339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 29523778 - 29523860
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 119  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| ||||||||    
T  29523778 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgtttacctac 29523860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 11203926 - 11203844
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 119  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||| ||||||||||||||  |||||||||| ||||||||    
T  11203926 aatatggagttaatttggcataaacaggttcctttaaaagtttctatacttgcttggcgactgttgagggatcgtttacctac 11203844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 33496653 - 33496572
Alignment:
Q  38 atatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 119  Q
    ||||||| ||| |||||||||||||||||||| | ||||| |||||| |||||||||||||  |||||||||| ||||||||    
T  33496653 atatggagttaatttggcataaacaggttcctttaaaagtttctatcattgcttggcgactgttgagggatcgtttacctac 33496572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 12342259 - 12342340
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 119  Q
    |||||||| ||| |||||||||||||||||| | | ||||| ||||||||||||||||||||  |||||||||| ||||||||    
T  12342259 aatatggagttaatttggcataaacaggttctt-taaaagtttctatccttgcttggcgactgttgagggatcgtttacctac 12342340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 26771022 - 26771128
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 136  Q
    |||||||| ||| | ||||||||||||| |||||| ||||| ||||| ||| ||||||| ||| |||||||||| |||||||| |||   ||||||||||    
T  26771022 aatatggagttaatgtggcataaacaggctcctcttaaagtctctattcttacttggcggcttttgagggatcgtttacctacgaaagcaaatttggcaa 26771121  T
Q  137 atcgtgg 143  Q
    | |||||    
T  26771122 accgtgg 26771128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 7031063 - 7031146
Alignment:
Q  50 tttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 133  Q
    |||||||||||||||||||| | ||| | ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||    
T  7031063 tttggcataaacaggttcctttaaaactttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 7031146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 35214404 - 35214525
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 136  Q
    |||||||| ||| | |||||||||||||||||| | ||||| |||||||||| ||||||  |  |||||||||| || ||||| |||   |||||| ||     
T  35214404 aatatggagttaatctggcataaacaggttcctttaaaagtttctatccttgtttggcggatgttgagggatcgtttgcctactaaatcaaatttgccag 35214503  T
Q  137 atcgtggcattctatatgtgga 158  Q
    | ||||| ||||||||||||||    
T  35214504 aacgtgggattctatatgtgga 35214525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 36801108 - 36801190
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 119  Q
    |||||||| ||| ||| ||||||| |||||||  | ||||| | |||||||||||||| ||| ||||||||||| ||||||||    
T  36801108 aatatggagttaatttagcataaataggttcccttaaaagtttatatccttgcttggcaactgctgagggatcgtttacctac 36801190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 963186 - 963295
Alignment:
Q  27 gttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaactt 126  Q
    |||||| || |||||||| ||  ||||||| |||||||| ||| | ||||| |||||  ||||||||||  | |||||||| ||||||||||| ||||      
T  963186 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 963285  T
Q  127 aatttggcaa 136  Q
    ||||||||||    
T  963286 aatttggcaa 963295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 2755959 - 2755843
Alignment:
Q  27 gttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaactt 126  Q
    |||||| || |||||||| ||  ||||||| |||||||| ||| | ||||| |||||  ||||||||||  | |||||||| ||||||||||| |||       
T  2755959 gttacatcaaaatatggagttgatttggcacaaacaggtacctttgaaagtgtctatatttgcttggcgtttgctgagggaccggttacctactaaataa 2755860  T
Q  127 aatttggcaaatcgtgg 143  Q
    |||||||||| ||||||    
T  2755859 aatttggcaagtcgtgg 2755843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 161
Target Start/End: Complemental strand, 19890785 - 19890661
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 136  Q
    |||||||| ||| | |||||||||||||||||| | ||||| || |||||||| | |||  |  |||||||||| |||||||| |||   || ||||||     
T  19890785 aatatggagttaatctggcataaacaggttcctttaaaagtttccatccttgcattgcggttgttgagggatcgattacctactaaatccaacttggcag 19890686  T
Q  137 atcgtggcattctatatgtggagga 161  Q
    |||||||||||  || |||||||||    
T  19890685 atcgtggcattacatttgtggagga 19890661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 16179042 - 16178952
Alignment:
Q  50 tttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcg 140  Q
    |||||||||||||||| ||||| |||||||||||  |||| ||||| ||  ||| ||||||  ||||||| |||   ||||||||||||||    
T  16179042 tttggcataaacaggtacctcttaaagtatctatttttgcgtggcgcctgatgaaggatcgtctacctactaaagagaatttggcaaatcg 16178952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 3140969 - 3140853
Alignment:
Q  27 gttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaactt 126  Q
    |||||| || |||||||| ||  ||||| | |||||||| ||| | ||||| |||||  |||||||||   | |||||||| ||||||||||| ||||      
T  3140969 gttacatcaaaatatggagttgatttggtacaaacaggtgcctttgaaagtgtctatatttgcttggcatttactgagggaccggttacctactaaacaa 3140870  T
Q  127 aatttggcaaatcgtgg 143  Q
    |||||||||| ||||||    
T  3140869 aatttggcaagtcgtgg 3140853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 15312704 - 15312584
Alignment:
Q  23 cccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaa 122  Q
    |||| ||||| || ||| |||| ||| |||||||||||||||| ||||| ||||| | |||  |||||||| |||| |||||| |||| || ||||  ||    
T  15312704 cccatttacatcaaaatttggagttaatttggcataaacaggtacctctaaaagtctatatatttgcttggtgactgctgaggaatcgtttgcctattaa 15312605  T
Q  123 acttaatttggcaaatcgtgg 143  Q
    |   ||||||| |||||||||    
T  15312604 agagaatttggaaaatcgtgg 15312584  T

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Target: scaffold0034 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 105845 - 106091
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  105845 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 105944  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |||    
T  105945 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 106044  T
Q  206 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    |||||          ||||||||||||||||||||||||||||||||    
T  106045 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtg 106091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 7924524 - 7924278
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  7924524 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 7924425  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |||    
T  7924424 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 7924325  T
Q  206 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    |||||          ||||||||||||||||||||||||||||||||    
T  7924324 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtg 7924278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 8299941 - 8299695
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||| ||||||| |||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  8299941 gacatcacaggagtagccccaattacaccataatttggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 8299842  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| |||    
T  8299841 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcgattatgtgttgctggatgtgggattgtcgaagatgttactc 8299742  T
Q  206 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    |||||          ||||||||||||||||||||||||||||||||    
T  8299741 atttgtttttgtcctgtgcaacttttggtgcattatggccgatggtg 8299695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 172241 - 172037
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||  ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172241 gacatcacaggagcagaaccagttacaccataaaatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 172142  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    || |||||||| |||||||||||||||| ||| |||| |||||||| | ||||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  172141 gaccggttacccacaaaacttaatttggtaaaccgtgacattctatctatggaggagcggttatgtgtttctggctgtggtaatgtcgaagatgtttctc 172042  T
Q  206 atttg 210  Q
    |||||    
T  172041 atttg 172037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 13396526 - 13396322
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||||| ||||| ||| ||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||     
T  13396526 gacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaagttcctctcaaagtatctatccttgcttggcgactcctgaga 13396427  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    ||||||||||||||||||  |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||||||||  || |||||||||  ||    
T  13396426 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatc 13396327  T
Q  206 atttg 210  Q
    |||||    
T  13396326 atttg 13396322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 32266692 - 32266498
Alignment:
Q  16 gagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttac 115  Q
    ||||| || ||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  32266692 gagcaaccacagttacaccataatttggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttac 32266593  T
Q  116 ctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctcatttg 210  Q
    |||| |||  |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||||||||  || |||||||||  |||||||    
T  32266592 ctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttg 32266498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 41665371 - 41665575
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||||| ||||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | || ||     
T  41665371 gacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgattcctaaga 41665470  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||| |||||||||||||  |||||||||||| | || |||| ||  | |||||| |||||| |||||||||||||||||||  || |||||||||  ||    
T  41665471 gatcagttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatc 41665570  T
Q  206 atttg 210  Q
    |||||    
T  41665571 atttg 41665575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 9922739 - 9922545
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| |||||||||| || ||||| || ||  |||| ||| ||||||||| |||||||||||||||||| ||||||||||| || ||||||||||||    
T  9922739 gacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatccttgcatgacgacttctgagg 9922640  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 200  Q
    ||||||||||||||||||  |||||||||||| ||||||||| ||  | |||||| |||| | ||||||||||| ||||||| ||| ||||||||    
T  9922639 gatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctggttgtgggaatgtagaagatgt 9922545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 20824403 - 20824307
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 133  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| |||||||| |||  ||||||||    
T  20824403 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 20824307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 200
Target Start/End: Complemental strand, 13200230 - 13200067
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 136  Q
    |||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||  ||  |||||||||| ||||||||||||   |||||||||     
T  13200230 aatatggagttagtttggcataaacaggttcctctaaaagtttcaatccttgcttggcagctattgagggatcgtttacctacaaaatacaatttggcag 13200131  T
Q  137 atcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 200  Q
    | ||  | ||||||  | ||||||  ||||| |||||| |||| ||||||  ||| ||||||||    
T  13200130 agcgcagaattctacctatggaggctcggttttgtgttactgggtgtgggcatgttgaagatgt 13200067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 17699589 - 17699507
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 119  Q
    |||||||| ||| |||||||||||||||||||  | ||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  17699589 aatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgagggatcgtttacctac 17699507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 2170449 - 2170328
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 136  Q
    |||||||| ||| | |||||||||||||||||| | ||||| |||||||||||||||||||   |||||||||| |||||||| |||   ||||||| |     
T  2170449 aatatggagttaatctggcataaacaggttcctttaaaagtttctatccttgcttggcgaccgttgagggatcgtttacctactaaatcaaatttggtag 2170350  T
Q  137 atcgtggcattctatatgtgga 158  Q
    | ||||| ||||||| ||||||    
T  2170349 aacgtgggattctatctgtgga 2170328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 37434239 - 37434157
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 119  Q
    |||||||| ||| ||||||||||||| |||||| | ||||| ||||| ||||||||||||||  |||||||||| ||||||||    
T  37434239 aatatggagttaatttggcataaacatgttcctttaaaagtctctattcttgcttggcgactgttgagggatcgtttacctac 37434157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 34137011 - 34137096
Alignment:
Q  52 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaa 137  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||| ||| ||| |||||| |||||||| |||   |||||||||||    
T  34137011 tggcataaacaggtacctctcaaagtctctattcttgcttggcggcttatgatggatcgtttacctacgaaagaaaatttggcaaa 34137096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 20497052 - 20496976
Alignment:
Q  176 ctggatgtgggattgtcgaagatgtttctcatttgnnnnnnn---gtgcaacttttggtgcattatggccgatggtg 249  Q
    |||||||||||||||||||||||||| ||||||||          ||||||||||||||||||||||||||||||||    
T  20497052 ctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtg 20496976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 210
Target Start/End: Complemental strand, 2529958 - 2529820
Alignment:
Q  72 caaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgt 171  Q
    |||||| || |||||||||||||| ||  |||||||||| ||||||||||||   ||||||| | ||||||| ||||||  | ||||||  ||||| |||    
T  2529958 caaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttggtagatcgtggaattctacttttggaggctcggttttgt 2529859  T
Q  172 gtttctggatgtgggattgtcgaagatgtttctcatttg 210  Q
    ||| | || ||||||  ||| ||||||||  ||||||||    
T  2529858 gttacagggtgtgggcatgttgaagatgtgactcatttg 2529820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 13879522 - 13879630
Alignment:
Q  39 tatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaat 138  Q
    |||||| ||||| ||||| ||| |||| |||||||||||  |  || ||||||||||  |  |||||||||| |||||||| |||   ||||||||||||    
T  13879522 tatggagttagtctggcacaaataggtacctctcaaagttacagtctttgcttggcggttgttgagggatcgtttacctactaaagccaatttggcaaat 13879621  T
Q  139 cgtggcatt 147  Q
    |||||||||    
T  13879622 cgtggcatt 13879630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 43270542 - 43270475
Alignment:
Q  52 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 119  Q
    |||||||||||||||||| | ||||| ||||||||| ||||||||||  ||| |||||| || |||||    
T  43270542 tggcataaacaggttcctttaaaagtttctatccttacttggcgactgttgaaggatcgtttgcctac 43270475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 25090494 - 25090384
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 136  Q
    |||||||| ||||| | ||| |||||||| ||||| ||||| || ||||||||||||||  |  ||||||||||  ||||||| |||   |||||| |||    
T  25090494 aatatggagttagtctagcacaaacaggtacctctaaaagtttcaatccttgcttggcggttgttgagggatcgactacctactaaagccaatttgacaa 25090395  T
Q  137 atcgtggcatt 147  Q
    |||| ||||||    
T  25090394 atcgcggcatt 25090384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 4938130 - 4938376
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  4938130 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 4938229  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |||    
T  4938230 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 4938329  T
Q  206 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    |||||          ||||||||||||||||||||||||||||||||    
T  4938330 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtg 4938376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 11277254 - 11277458
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  11277254 gacatcacaggagcaaccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaga 11277353  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||||||||||||| |||  |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||||||||  || |||||||||  ||    
T  11277354 gatcggttacctacgaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatc 11277453  T
Q  206 atttg 210  Q
    |||||    
T  11277454 atttg 11277458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 47877121 - 47876917
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||||||||||| || |||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  47877121 gacatcacaggagcagccccagttacatcaaaatagggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgaga 47877022  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||| |||||||||||||  |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||| ||||  || |||||||||  ||    
T  47877021 gatcagttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgcgggaacgttgaagatgttaatc 47876922  T
Q  206 atttg 210  Q
    |||||    
T  47876921 atttg 47876917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 29968113 - 29967909
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||  ||||| ||||     
T  29968113 gacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttgaggacttttgaga 29968014  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||||||||||||| |||  |||||||||||| | ||||||| ||  | |||||| |||||| |||||||||||||||||||  || |||||||||  ||    
T  29968013 gatcggttacctacgaaaagtaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatc 29967914  T
Q  206 atttg 210  Q
    |||||    
T  29967913 atttg 29967909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 235439 - 235614
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||||||||||| || |||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  235439 gacatcacaggagcagccccagttacatcaaaatatggagttaatttggcataaacaggttcatctcaaagtctctatccttgcttggcgacttctgagg 235538  T
Q  106 gatcggttacctacaaaactta--atttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctgg 179  Q
    ||||||||||||||||||   |  |||||||||| ||||||||| ||  | |||||| |||||| |||||||||||    
T  235539 gatcggttacctacaaaaaaaatcatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 235614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 37919682 - 37919487
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||||| ||||| ||| ||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||     
T  37919682 gacatcacaggagcagccccaattacatcatcatatgaagttaatttggtataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 37919583  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtt 201  Q
    ||| ||||||||||||||  |||||||||||| ||| ||||| ||  | |||||| |||||| ||||||||| | |||||||  || |||||||||    
T  37919582 gattggttacctacaaaaaataatttggcaaaccgttgcattttacctttggaggcgcggttgtgtgtttctagttgtgggaacgttgaagatgtt 37919487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 17720773 - 17720569
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| |||||||||| || ||||| || ||  |||| ||| ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||    
T  17720773 gacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatccttgcatggcgacttctgagg 17720674  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    ||||||||||||||||||  |||||||||||| ||||||||| ||  | |||||| |||| | ||||||||| | ||||||| ||  |||||||||  ||    
T  17720673 gatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctagttgtgggaatgaagaagatgttaatc 17720574  T
Q  206 atttg 210  Q
    |||||    
T  17720573 atttg 17720569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 120 - 249
Target Start/End: Original strand, 31177421 - 31177553
Alignment:
Q  120 aaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctcatttg---nnnnnn 216  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||             
T  31177421 aaaacttaatttgacaaatcgtggcattctatatgtggaggagcggttatgtgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtct 31177520  T
Q  217 ngtgcaacttttggtgcattatggccgatggtg 249  Q
     ||||||||||||||||||||||||||||||||    
T  31177521 tgtgcaacttttggtgcattatggccgatggtg 31177553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 200
Target Start/End: Complemental strand, 25619566 - 25619403
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 136  Q
    |||||||| ||| | |||||||||||||||||| | ||||| |||||||||||||||||  |  ||||||| || |||||||| |||   || ||||||     
T  25619566 aatatggagttaatatggcataaacaggttcctttaaaagtttctatccttgcttggcggttgttgagggaacgattacctactaaatccaacttggcag 25619467  T
Q  137 atcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 200  Q
    |||||||||||  || ||||||||| || || |||||  | |||||||||  ||| ||||||||    
T  25619466 atcgtggcattgcatctgtggaggaccgattttgtgtcacaggatgtgggcatgttgaagatgt 25619403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 18532735 - 18532653
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 119  Q
    |||||||| ||| | | |||||||||||||||| | ||||| | ||||||||||||||||||  |||||||||| ||||||||    
T  18532735 aatatggagttaatctcgcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctac 18532653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 37254865 - 37254743
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 136  Q
    |||||||| ||| | ||||||||||||||| || | ||||| || ||||||||||||||  |  |||||||||| |||||||| |||   || ||||||     
T  37254865 aatatggagttaatctggcataaacaggttactttaaaagtttcaatccttgcttggcggttgttgagggatcgtttacctactaaatccaacttggcag 37254766  T
Q  137 atcgtggcattctatatgtggag 159  Q
    || |||||||| ||| |||||||    
T  37254765 attgtggcattatatctgtggag 37254743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 23642593 - 23642839
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  23642593 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 23642692  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |||    
T  23642693 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 23642792  T
Q  206 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    |||||          ||||||||||||||||||||||||||||||||    
T  23642793 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtg 23642839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 47418942 - 47418696
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  47418942 gacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 47418843  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||| ||| | |||||||||||||||||||||||| |||    
T  47418842 gatcggttacctacaaaacttaatttggcaactcgtggcattctatctggggaggagcggttatgcgttgcaggatgtgggattgtcgaagatgttactc 47418743  T
Q  206 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    |||||          ||||||||||||||||||||||||||||||||    
T  47418742 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtg 47418696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 13270893 - 13271139
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  13270893 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 13270992  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| ||     
T  13270993 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgagttactggatgtgggattgtcgaagatgttacta 13271092  T
Q  206 at---ttgnnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    ||   ||        ||||||||||||||||||||||||||||||||    
T  13271093 atttatttttgtcttgtgcaacttttggtgcattatggccgatggtg 13271139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 47685897 - 47686143
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| | ||||||||| |||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  47685897 gacatcacaagagcagcccaagttacaccataatctggacttaatttgacataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaga 47685996  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    ||||||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47685997 gatcggttacctacaaaacataatttggcaaaccgtggcattttatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaagatgtttctc 47686096  T
Q  206 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
     ||||          ||||||||||| ||||||||||||||||||||    
T  47686097 gtttgtttttgtcttgtgcaacttttagtgcattatggccgatggtg 47686143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 15740359 - 15740155
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |     
T  15740359 gacatcataggagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgcga 15740260  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    ||||||||||||||||||  ||||||| |||  ||||||||| ||  | |||||| |||||| ||||||||||| ||||||| |||  ||||||||  ||    
T  15740259 gatcggttacctacaaaaaataatttgacaagccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtgggaatgttaaagatgttaatc 15740160  T
Q  206 atttg 210  Q
    |||||    
T  15740159 atttg 15740155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 1828542 - 1828746
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||  || |     
T  1828542 gacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagactattgcga 1828641  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    ||| ||||||||||||||  |||||||||||| ||||||||| ||  | |||||| |||||| ||||||||||| ||||||| ||| |||||||||  ||    
T  1828642 gataggttacctacaaaaactaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttgatc 1828741  T
Q  206 atttg 210  Q
    |||||    
T  1828742 atttg 1828746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 19755405 - 19755198
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| | ||||||||||| || || ||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  19755405 gacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 19755306  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctat---atgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgttt 202  Q
    ||||||||||||||||||  |||||||||||| |||| |||| |||    | |||||| |||||| |||||||||||||||||||  || |||||||||     
T  19755305 gatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttctggatgtgggagcgttgaagatgtta 19755206  T
Q  203 ctcatttg 210  Q
     |||||||    
T  19755205 atcatttg 19755198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 19784401 - 19784608
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| | ||||||||||| || || ||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  19784401 gacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 19784500  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctat---atgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgttt 202  Q
    ||||||||||||||||||  |||||||||||| |||| |||| |||    | |||||| |||||| |||||||||||||||||||  || |||||||||     
T  19784501 gatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttctggatgtgggagcgttgaagatgtta 19784600  T
Q  203 ctcatttg 210  Q
     |||||||    
T  19784601 atcatttg 19784608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 7404051 - 7403857
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||||||||||| || |||||| | ||| ||||||||||||| |||| | ||||||| |||||||||||||||||||||||||||    
T  7404051 gacatcacaggagcagccccagttacatcaaaatatgaagttaatttggcataaacaagttcatttcaaagtctctatccttgcttggcgacttctgagg 7403952  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 200  Q
    ||||||||||||||||||   ||||||||||| ||||||||| ||  | |||||| |||||| ||||| |||||||| ||||  || ||||||||    
T  7403951 gatcggttacctacaaaaaagaatttggcaaaccgtggcattttacgtttggaggcgcggttgtgtgtctctggatgcgggaacgttgaagatgt 7403857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 55725719 - 55725822
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 136  Q
    |||||||| ||| ||||||||||||| |||||||| ||||| || |||||||||||||| ||  |||||||||| ||||||||||||   |||||||||     
T  55725719 aatatggagttaatttggcataaacaagttcctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttggcag 55725818  T
Q  137 atcg 140  Q
    ||||    
T  55725819 atcg 55725822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 12697920 - 12697838
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 119  Q
    |||||| | ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| ||||||||    
T  12697920 aatatgaaattaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgtttacctac 12697838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 45472742 - 45472824
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 119  Q
    |||||||| ||| |||||||||||||||||||| | ||||| |||||||||| |||||||||  |||||||||| ||||||||    
T  45472742 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgagggatcgtttacctac 45472824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 159842 - 159939
Alignment:
Q  155 tggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctcatttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    ||||||| || ||||| ||| |||||||||||||||||||||||||| ||||||||          ||||||||||||||||||||||||||||||||    
T  159842 tggaggaacgattatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtg 159939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 11587233 - 11587331
Alignment:
Q  39 tatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaa 137  Q
    |||||| ||| ||||||||||| || | ||| ||||||||||||| ||||||||||| ||||||||| |||| |||||||| |||   |||||||||||    
T  11587233 tatggagttaatttggcataaatagatacctatcaaagtatctattcttgcttggcggcttctgaggaatcgtttacctacgaaagaaaatttggcaaa 11587331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 8361207 - 8361126
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttaccta 118  Q
    |||||||| ||| |||||||||||||||||||  | ||||| |||||||||| ||||||||| |||||| |||| |||||||    
T  8361207 aatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgtttggcgactgctgaggaatcgtttaccta 8361126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 20002832 - 20002750
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 119  Q
    |||||||| ||| |||||||||||||||||| | | ||||| |||||| |||||||||| ||  |||||||||| ||||||||    
T  20002832 aatatggagttaatttggcataaacaggttcttttaaaagtttctatcattgcttggcggctgttgagggatcgtttacctac 20002750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 11207 - 11453
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| |||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11207 gacatcacaggagcagacccagctacaccataatctggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctcagg 11306  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||| ||    
T  11307 gatcggttacctacaaaacttaatttggcaaaccgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaaaatgtttttc 11406  T
Q  206 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtg 249  Q
    |||||          ||||||||||||| ||||||||||||||||||    
T  11407 atttgtttttgtcttgtgcaacttttggagcattatggccgatggtg 11453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 29 - 249
Target Start/End: Complemental strand, 12734240 - 12734017
Alignment:
Q  29 tacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaa 128  Q
    |||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12734240 tacatcataatatggatttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaa 12734141  T
Q  129 tttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctcatttg---nnnnnnngtgcaact 225  Q
    ||||| ||  ||||||||||||| | ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||          ||||||||    
T  12734140 tttggtaacccgtggcattctatctctggaggagcggttatgtgtttctagatgtgggaatgtcgaagatgtttctcatttgtttttgtcttgtgcaact 12734041  T
Q  226 tttggtgcattatggccgatggtg 249  Q
    ||||| ||||||||||||||||||    
T  12734040 tttggagcattatggccgatggtg 12734017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 2553775 - 2553571
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| | ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  2553775 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 2553676  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    ||||||||||||||||||  |||||||||||| ||||||||| ||  | |||||| || ||| |||||||||||||||||||  || |||||||||  ||    
T  2553675 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 2553576  T
Q  206 atttg 210  Q
    |||||    
T  2553575 atttg 2553571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 6 - 200
Target Start/End: Original strand, 18651236 - 18651430
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||||||||| | || |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18651236 gacatcacaggagcagccccagttagatcaaaatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggcgacttctgagg 18651335  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 200  Q
    ||||||||||||||||||  |||||||| ||| ||||| ||| ||  | |||| | |||||| ||||| |||||||| ||||  || ||||||||    
T  18651336 gatcggttacctacaaaaaataatttggaaaaccgtgggattttacctttggatgcgcggttgtgtgtctctggatgcgggaccgttgaagatgt 18651430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 201
Target Start/End: Original strand, 24767426 - 24767621
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||| ||||||| || |||||||| ||| ||| |||||||||||||||| ||||||| |||||||||||||| |||||||| |||    
T  24767426 gacatcacaggagcagccctagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttgacgacttcttagg 24767525  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtt 201  Q
    ||||||||||||||||||  |||||||||||||||||||||| ||  | |||||| |||||| ||||||| ||| || ||||  || |||||||||    
T  24767526 gatcggttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaacgttgaagatgtt 24767621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 21168337 - 21168220
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| |||||| ||||| ||       
T  21168337 gacatcacaggagcagccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtatctatcctagcttggagacttttgcaa 21168238  T
Q  106 gatcggttacctacaaaa 123  Q
    ||||| ||||||||||||    
T  21168237 gatcgattacctacaaaa 21168220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 17579114 - 17579210
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 133  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| |||||||| |||  ||||||||    
T  17579114 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 17579210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 17573688 - 17573784
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 133  Q
    |||||||| ||| |||||||||||||||||||| | ||||  ||||||||||||||||||||  |||||||||| |||||||| |||  ||||||||    
T  17573688 aatatggagttaatttggcataaacaggttcctttaaaagattctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 17573784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 17606367 - 17606449
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 119  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||  ||||||||    
T  17606367 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcatttacctac 17606449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 21630140 - 21630226
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 123  Q
    |||||||| ||| |||||||||| ||||||||| | ||||| |||||||||| |||||||||  |||||||||| ||||||||||||    
T  21630140 aatatggagttaatttggcataaccaggttcctttaaaagtttctatccttgtttggcgactattgagggatcgtttacctacaaaa 21630226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 176
Target Start/End: Original strand, 14373026 - 14373163
Alignment:
Q  39 tatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaat 138  Q
    |||||| ||| |||||||||||||||| ||||| ||||||||||| ||||||||||  ||| ||||| |  | |||||||| |||   |||||||||||     
T  14373026 tatggatttaatttggcataaacaggtacctctaaaagtatctattcttgcttggcagcttttgaggaacggcttacctacgaaaggaaatttggcaaac 14373125  T
Q  139 cgtggcattctatatgtggaggagcggttatgtgtttc 176  Q
    ||||||||| | | | |||||| |||||| ||||||||    
T  14373126 cgtggcattatttctatggaggggcggttgtgtgtttc 14373163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 10577282 - 10577364
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 119  Q
    ||||| || ||| |||||||||||||||||||| | ||||| | ||||||||||||||||||  |||||||||| ||||||||    
T  10577282 aatatagagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctac 10577364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 15958861 - 15958946
Alignment:
Q  52 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaa 137  Q
    |||||||||||||||||||| ||||| ||||| ||||||||||| ||| |||||||||  |||||||| |||   |||||||||||    
T  15958861 tggcataaacaggttcctcttaaagtctctattcttgcttggcggcttttgagggatcatttacctacgaaagcaaatttggcaaa 15958946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 20883066 - 20883215
Alignment:
Q  37 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 136  Q
    |||||||| ||| | ||||||||| |||||||| | ||||| ||||||||||||||||| ||  |||||||| | |||||||| |||   || |||| |     
T  20883066 aatatggagttaatctggcataaataggttcctttaaaagtttctatccttgcttggcggctgttgagggattgtttacctactaaatcgaacttggtag 20883165  T
Q  137 atcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggg 186  Q
    ||||||||||| ||| ||||||||  ||||| |||||  | |||||||||    
T  20883166 atcgtggcattatatctgtggaggctcggttttgtgtcacgggatgtggg 20883215  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 13937817 - 13937708
Alignment:
Q  27 gttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaactt 126  Q
    |||||| || |||||||| ||  ||||||| |||||||| ||| | ||||| |||||  ||||||||||  | |||||||| ||||||||||| ||||      
T  13937817 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 13937718  T
Q  127 aatttggcaa 136  Q
    ||||||||||    
T  13937717 aatttggcaa 13937708  T

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Target: scaffold0472 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 3390 - 3186
Alignment:
Q  6 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 105  Q
    ||||||| ||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||     
T  3390 gacatcacaggagcaaccctagttacaccataatatggagttaatttggcataaacaggttcctcttaaagtttctatccttgcttggagacttttgaga 3291  T
Q  106 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 205  Q
    |||||||||||||| |||   ||||||||||| | ||||||| ||  | |||||| |||||| |||||||||||||||||||  || |||||||||  ||    
T  3290 gatcggttacctacgaaaagcaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatc 3191  T
Q  206 atttg 210  Q
    |||||    
T  3190 atttg 3186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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