View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_202 (Length: 249)
Name: NF6872A_low_202
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_202 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 103 - 230
Target Start/End: Complemental strand, 10597664 - 10597537
Alignment:
| Q |
103 |
ctttgctctctcacttgatgcagaatcaacatgcgaccgagattcacttccaccatcatcatccttcatacggaaatattccttgggacttccattacca |
202 |
Q |
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| T |
10597664 |
ctttgttctctcacttgatgcagaatcaacatgcgaccgagattcacttctaccatcatcatccttcatacagaactgttccttgggacttccatcacta |
10597565 |
T |
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| Q |
203 |
gtaccttcagatgaatctttttctgatg |
230 |
Q |
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| T |
10597564 |
gtaccttcagatgaatctttttctgatg |
10597537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 10597776 - 10597666
Alignment:
| Q |
27 |
ttgtggagtccaatgcatcagcagcaattacaggactataatcttcgttgatgaatccgtttggtagcagtgtagtctttgctctctcacttgatgcaga |
126 |
Q |
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| T |
10597776 |
ttgtggaatccgatgcatcagcagccattacaggactgctatcctcattgattaatccatttggtagcattgtggtctttgttctctcacttaatgcaga |
10597677 |
T |
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| Q |
127 |
atcaacatgcg |
137 |
Q |
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| T |
10597676 |
atcaacatgcg |
10597666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 53 - 230
Target Start/End: Complemental strand, 53388425 - 53388248
Alignment:
| Q |
53 |
attacaggactataatcttcgttgatgaatccgtttggtagcagtgtagtctttgctctctcacttgatgcagaatcaacatgcgaccgagattcacttc |
152 |
Q |
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| T |
53388425 |
attacaggactacaatcctcattgattaatccatctggtagcattgtaggctttgttctctcacttgacgtagaatcaacatgcgaccgagattcacttc |
53388326 |
T |
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| Q |
153 |
caccatcatcatccttcatacggaaatattccttgggacttccattaccagtaccttcagatgaatctttttctgatg |
230 |
Q |
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| T |
53388325 |
caccgtcatcatccttcatacataattgttccttgggacttccctcactaataccttcagatgaatctttttctgatg |
53388248 |
T |
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