View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_204 (Length: 249)
Name: NF6872A_low_204
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_204 |
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| [»] scaffold0110 (4 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 13275 - 13506
Alignment:
| Q |
1 |
atgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgattcatttttagattaagtgt--gtttagattatccgtgagtttg |
98 |
Q |
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| T |
13275 |
atgctgctgctgctcaaagatatagacagaaataccaggtaattttagtattttgattcatttttagattaagtgtgtgtttagattatccatgagtttg |
13374 |
T |
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| Q |
99 |
ctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccataatgatttcgccaaaaactacatttggaagcttcaacaaagtcacaagg |
198 |
Q |
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| T |
13375 |
ctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccatagtgatttcgccaaaaactacattttgaagcttcaacaaaatcacaagg |
13474 |
T |
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| Q |
199 |
tgcaactgtgatttcgtcaaactcgatttgat |
230 |
Q |
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| T |
13475 |
tgcaactgtgatttcgtcaaactcgatttgat |
13506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 21012 - 21243
Alignment:
| Q |
1 |
atgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgattcatttttagattaagtgt--gtttagattatccgtgagtttg |
98 |
Q |
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| T |
21012 |
atgctgctgctgctcaaagatatagacagaaataccaggtaattttagtattttgattcatttttagattaagtgtgtgtttagattatccatgagtttg |
21111 |
T |
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| Q |
99 |
ctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccataatgatttcgccaaaaactacatttggaagcttcaacaaagtcacaagg |
198 |
Q |
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| T |
21112 |
ctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccatagtgatttcgccaaaaactacattttgaagcttcaacaaaatcacaagg |
21211 |
T |
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| Q |
199 |
tgcaactgtgatttcgtcaaactcgatttgat |
230 |
Q |
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| T |
21212 |
tgcaactgtgatttcgtcaaactcgatttgat |
21243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 30132 - 30254
Alignment:
| Q |
1 |
atgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgattcatttttagattaag--tgtgtttagattatccgtgagtttg |
98 |
Q |
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| T |
30132 |
atgctgctgctgctcaaagatatagagagaaataccaggtaatattagtattttgattcgtttttagattaagtatgtgtttggattagcagtgagtttg |
30231 |
T |
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| Q |
99 |
ctagaatcacgatgtgtcatagt |
121 |
Q |
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| T |
30232 |
tcagagtcatgatgtgccatagt |
30254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 30224 - 30332
Alignment:
| Q |
122 |
tgagtttgtcacaatcacgatgtgccataatgatttcgccaaaaactacatttggaagcttcaacaaagtcacaaggtgcaactgtgatttcgtcaaact |
221 |
Q |
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| T |
30224 |
tgagtttgtcagagtcatgatgtgccatagtgatttaggcaaaaactacactttgcagcttcaacaaagtcacatggtgcaactgtgatttcgtcaaact |
30323 |
T |
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| Q |
222 |
cgatttgat |
230 |
Q |
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||| |||| |
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| T |
30324 |
tgatgtgat |
30332 |
T |
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