View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_205 (Length: 248)
Name: NF6872A_low_205
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_205 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 40924837 - 40925069
Alignment:
| Q |
9 |
gatggacatcctcaaagaaatgtacttgttgttacctgcattgtgtcttcattggactcaatcttgctccggcggtagtgcctgcacgacgttcaactca |
108 |
Q |
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| T |
40924837 |
gatgaacatcctcaaagaaatgtacttgttgttacctgtattgtgtcttcattggactcaatcttgctccggcggtagtgcctgcacgacgt-caactca |
40924935 |
T |
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| Q |
109 |
gtgaggggcaaaggtgccaccgctgcccgtggtggtttgggaggtgaacgcagccattttaagaaagttggactgtatgccaagatcaatatcactgcaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40924936 |
gtgaggggcaaaggtgccaccgctgcccgtggtggtttgggaggtgaacgcagccattttaagaaagttggaccgtatgccaagatcaatatcactgcaa |
40925035 |
T |
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| Q |
209 |
tagcaaccacaacaatggaagcaaacagtataag |
242 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
40925036 |
tagcaaccacaacaatggaagcaaacagtataag |
40925069 |
T |
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