View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6872A_low_210 (Length: 247)

Name: NF6872A_low_210
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6872A_low_210
NF6872A_low_210
[»] chr5 (1 HSPs)
chr5 (2-231)||(33560854-33561083)
[»] chr2 (8 HSPs)
chr2 (24-231)||(39161704-39161911)
chr2 (24-231)||(39207283-39207490)
chr2 (2-231)||(39389111-39389340)
chr2 (2-213)||(39222725-39222936)
chr2 (49-206)||(39192439-39192596)
chr2 (49-206)||(39198119-39198276)
chr2 (44-207)||(39215514-39215677)
chr2 (36-202)||(39468213-39468379)
[»] chr6 (1 HSPs)
chr6 (37-202)||(16113174-16113339)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 231
Target Start/End: Original strand, 33560854 - 33561083
Alignment:
Q  2 acaaatgaaggacattaaattaaaggaggaagaactcgaatcaaaagagaagcatttttcaagacaagttgaggacttcaaatcaaaacagaaacaattt 101  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  33560854 acaagtgaaggacattaaattaaaggaggaagaactcgaatcaaaagagaagcattttgcaagacaagttgaggacttcaaatcaaaacagaaccaattt 33560953  T
Q  102 cagggacgatgggatgaactggagtcgaaagagtacaagttcaaagaaaaggtgaaggagctcagcttaaaagaaaagcagtgtgaaggacaaggcaagg 201  Q
    |||| ||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33560954 caggtacgatggaatgaactggagtcgaaagagtacaagttcgatgaaaaggtgaaggagctcagcttaaaagtaaagcagtgtgaaggacaaggcaagg 33561053  T
Q  202 atcctatgtcaaagcggagtaaatttgatg 231  Q
    ||||||||||||| ||||||||||||||||    
T  33561054 atcctatgtcaaaacggagtaaatttgatg 33561083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 24 - 231
Target Start/End: Original strand, 39161704 - 39161911
Alignment:
Q  24 aaggaggaagaactcgaatcaaaagagaagcatttttcaagacaagttgaggacttcaaatcaaaacagaaacaatttcagggacgatgggatgaactgg 123  Q
    |||||| || |||||||||||||| | |||||||||  |||||||||||||||||||||||||||||||||||||||| | ||||| ||| |||||||||    
T  39161704 aaggagaaacaactcgaatcaaaaaataagcattttgaaagacaagttgaggacttcaaatcaaaacagaaacaatttgaaggacggtggaatgaactgg 39161803  T
Q  124 agtcgaaagagtacaagttcaaagaaaaggtgaaggagctcagcttaaaagaaaagcagtgtgaaggacaaggcaaggatcctatgtcaaagcggagtaa 223  Q
    || |||||||||| ||| |||||| ||| | ||||||||||| ||||||||||||||| | ||||||||||| ||||||||||| |||||||  || |||    
T  39161804 agacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaaggacaagtcaaggatcctaagtcaaagatgaataa 39161903  T
Q  224 atttgatg 231  Q
    ||||||||    
T  39161904 atttgatg 39161911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 24 - 231
Target Start/End: Complemental strand, 39207490 - 39207283
Alignment:
Q  24 aaggaggaagaactcgaatcaaaagagaagcatttttcaagacaagttgaggacttcaaatcaaaacagaaacaatttcagggacgatgggatgaactgg 123  Q
    |||||| || |||||||||||||| | |||||||||  |||||||||||||||||||||||||||||||||||||||| | ||||| ||| |||||||||    
T  39207490 aaggagaaacaactcgaatcaaaaaataagcattttgaaagacaagttgaggacttcaaatcaaaacagaaacaatttgaaggacggtggaatgaactgg 39207391  T
Q  124 agtcgaaagagtacaagttcaaagaaaaggtgaaggagctcagcttaaaagaaaagcagtgtgaaggacaaggcaaggatcctatgtcaaagcggagtaa 223  Q
    || |||||||||| ||| |||||| ||| | ||||||||||| ||||||||||||||| | ||||||||||| ||||||||||| |||||||  || |||    
T  39207390 agacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaaggacaagtcaaggatcctaagtcaaagatgaataa 39207291  T
Q  224 atttgatg 231  Q
    ||||||||    
T  39207290 atttgatg 39207283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 39389340 - 39389111
Alignment:
Q  2 acaaatgaaggacattaaattaaaggaggaagaactcgaatcaaaagagaagcatttttcaagacaagttgaggacttcaaatcaaaacagaaacaattt 101  Q
    |||| |||||| |||||||| ||||||||| |||||||||||| || || |||||||   ||| |||||||||||||||||||||||| || | | ||||    
T  39389340 acaagtgaagggcattaaatcaaaggaggaggaactcgaatcacaaaaggagcatttgaaaagccaagttgaggacttcaaatcaaaagagcagcgattt 39389241  T
Q  102 cagggacgatgggatgaactggagtcgaaagagtacaagttcaaagaaaaggtgaaggagctcagcttaaaagaaaagcagtgtgaaggacaaggcaagg 201  Q
     |  |||||||| | |||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |||| ||| |    
T  39389240 aaaagacgatggaacgaactggagttgaaagagtataagttcaaagtaaaggtgaaggagctcaacttaaaagaaaagcagtttgaagggcaagtcaacg 39389141  T
Q  202 atcctatgtcaaagcggagtaaatttgatg 231  Q
    |||||  |||||||| || |||||||||||    
T  39389140 atcctgagtcaaagctgaataaatttgatg 39389111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 39222725 - 39222936
Alignment:
Q  2 acaaatgaaggacattaaattaaaggaggaagaactcgaatcaaaagagaagcatttttcaagacaagttgaggacttcaaatcaaaacagaaacaattt 101  Q
    |||| |||||||||| |||| ||||||||| ||||||||||||||| ||||||||||   ||| ||||| ||||| || ||||||||| |||| ||||||    
T  39222725 acaagtgaaggacataaaatcaaaggaggaggaactcgaatcaaaaaagaagcatttcgaaagccaagtcgaggagtttaaatcaaaagagaagcaattt 39222824  T
Q  102 cagggacgatgggatgaactggagtcgaaagagtacaagttcaaagaaaaggtgaaggagctcagcttaaaagaaaagcagtgtgaaggacaaggcaagg 201  Q
     | | ||||||| || |||| |||||  ||||| | |||||||||| ||||||||||||||||| ||| |||||||||  || ||||||||||| |||||    
T  39222825 gaagaacgatggaataaacttgagtcagaagagaataagttcaaagcaaaggtgaaggagctcaacttcaaagaaaagtggtttgaaggacaagtcaagg 39222924  T
Q  202 atcctatgtcaa 213  Q
    ||||| ||||||    
T  39222925 atcctgtgtcaa 39222936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 49 - 206
Target Start/End: Complemental strand, 39192596 - 39192439
Alignment:
Q  49 agaagcatttttcaagacaagttgaggacttcaaatcaaaacagaaacaatttcagggacgatgggatgaactggagtcgaaagagtacaagttcaaaga 148  Q
    |||||||||||  ||| ||||| ||||| |||||||||||| |||| |||||  | |||||||||  |||||| ||||| |||||| | ||||||||||     
T  39192596 agaagcattttaaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagc 39192497  T
Q  149 aaaggtgaaggagctcagcttaaaagaaaagcagtgtgaaggacaaggcaaggatcct 206  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||    
T  39192496 aaaggtgaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcct 39192439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 49 - 206
Target Start/End: Complemental strand, 39198276 - 39198119
Alignment:
Q  49 agaagcatttttcaagacaagttgaggacttcaaatcaaaacagaaacaatttcagggacgatgggatgaactggagtcgaaagagtacaagttcaaaga 148  Q
    |||||||||||  ||| ||||| ||||| |||||||||||| |||| |||||  | |||||||||  |||||| ||||| |||||| | ||||||||||     
T  39198276 agaagcattttaaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagc 39198177  T
Q  149 aaaggtgaaggagctcagcttaaaagaaaagcagtgtgaaggacaaggcaaggatcct 206  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||    
T  39198176 aaaggtgaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcct 39198119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 207
Target Start/End: Original strand, 39215514 - 39215677
Alignment:
Q  44 aaaagagaagcatttttcaagacaagttgaggacttcaaatcaaaacagaaacaatttcagggacgatgggatgaactggagtcgaaagagtacaagttc 143  Q
    |||| ||||||| |||  |||||||||||||  |||  |||||||| |||| |||||| | ||||| ||| | ||||| ||||  |||||| | ||||||    
T  39215514 aaaaaagaagcaatttgaaagacaagttgagagctttgaatcaaaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttc 39215613  T
Q  144 aaagaaaaggtgaaggagctcagcttaaaagaaaagcagtgtgaaggacaaggcaaggatccta 207  Q
    |||| | |||| |||||| |||  |||||||| ||||||| || |||||||| |||||||||||    
T  39215614 aaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatccta 39215677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 39468213 - 39468379
Alignment:
Q  36 ctcgaatcaaaagagaagcatttttcaagacaagttgaggacttcaaatcaaaacagaaacaatttcagggacgatgggatgaactggagtcgaaagagt 135  Q
    |||||||||||| ||||  |||||   || ||||||||||| |||||||||||| | || |||||| | | ||| ||  | ||| || |||| ||||||     
T  39468213 ctcgaatcaaaaaagaaatattttgacagtcaagttgaggatttcaaatcaaaagataagcaatttgatgaacggtgtaaagaattgaagtcaaaagaga 39468312  T
Q  136 acaagttcaaagaaaaggtgaaggagctcagcttaaaagaaaagcagtgtgaaggacaaggcaagga 202  Q
    |   |||||||| ||||||||||||| |||  |||||||| ||||||  ||||||||||| ||||||    
T  39468313 atcggttcaaagtaaaggtgaaggagttcaagttaaaagagaagcagattgaaggacaagtcaagga 39468379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 16113174 - 16113339
Alignment:
Q  37 tcgaatcaaaagagaagcatttttcaagacaagttgaggacttcaaatcaaaacagaaacaatttcagggacgatgggatgaactggagtcgaaagagta 136  Q
    ||||||||||| | ||||||||   ||| ||||||||| | |||||||||||  | || |||||| | | ||| ||| | ||||| || || |||||| |    
T  16113174 tcgaatcaaaaaataagcatttggaaagccaagttgagtatttcaaatcaaacgataagcaatttgaagaacggtggaaagaactcgaatcaaaagagaa 16113273  T
Q  137 caagttcaaagaaaaggtgaaggagctcagcttaaaagaaaagcagtgtgaaggacaaggcaagga 202  Q
      ||||||||| ||||| |||||||||||  |||||||| ||||||  ||||| ||||| ||||||    
T  16113274 tcagttcaaagtaaaggagaaggagctcaagttaaaagagaagcagattgaagtacaagtcaagga 16113339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University