View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_212 (Length: 247)
Name: NF6872A_low_212
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_212 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 48693627 - 48693856
Alignment:
| Q |
11 |
cagagacatattgaaatttggactagtacttcttgaaaagaattgatatcacaaagttgtgtagtatagaatagaagatattatggaaaaagagtgtgtt |
110 |
Q |
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| T |
48693627 |
cagagacatattgaaatttggactagtacttcttgaaaagaattgatatcacaaagttgtgtagtatagaatagaagatattatggaaaaagagtgtgtt |
48693726 |
T |
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| Q |
111 |
gaggatattatggaaattgaagtccttccttcaatgtggccagaagatattggagctgatgttggaaagcagctcaatatagaaaagccaggaaatgatc |
210 |
Q |
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| T |
48693727 |
gaggatattatggaaattgaagtccttccttcaatgtggccagaagatattggagctgatgttggaaagcagttcaatatagaaaagccaggaaatgatc |
48693826 |
T |
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| Q |
211 |
aagatatgttagaagaagtatcaatcatag |
240 |
Q |
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| T |
48693827 |
aagatgtgttagaagaagtatcaatcatag |
48693856 |
T |
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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 3457064 - 3456967
Alignment:
| Q |
139 |
cttcaatgtggccagaagatattggagctgatgttggaaagcagctcaatatagaaaagccaggaaatgatcaagatatgttagaagaagtatcaatc |
236 |
Q |
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| T |
3457064 |
cttcaatgtggccagaagatgttggaactgatgttggaaaacaattcaacatagaaaaaccaggaagagatcaagatatgttggaagaagtaacaatc |
3456967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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