View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_220 (Length: 245)
Name: NF6872A_low_220
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_220 |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 46844751 - 46844530
Alignment:
| Q |
1 |
atttaggcatcttttgtgttatataggcatcacgtcctccaacaatttcctctggtcacggcattcatggctgcaaaatgccatctcacccctgcaatgc |
100 |
Q |
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| T |
46844751 |
atttaggcatctt--gtgctatataggcatcacgtcctccaacaacatcctctggtcacggcattcatggctgcaaaatgccatctcacccctgcaatgc |
46844654 |
T |
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| Q |
101 |
aataatgcaactaggttcaagatctcatggtattcactatcattccttcaaggaatcgttctaattctaatcggacacaaattagcaaatcatactttcc |
200 |
Q |
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| T |
46844653 |
aataatgcaactaggttcaagatctcatggtattcactatcattccttcaaggaatcggtctaattctaatcggacacaaattagcaaattatactttcc |
46844554 |
T |
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| Q |
201 |
tttgatgtaataagacagacacgg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
46844553 |
tttgatgtaataagacagacacgg |
46844530 |
T |
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Target: scaffold0057 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 48929 - 48986
Alignment:
| Q |
35 |
tcctccaacaatttcctctggtcacggcattcatggctgcaaaatgccatctcacccc |
92 |
Q |
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| T |
48929 |
tcctccaacagtttcctctggttacggcattcagggttgcaaaatgccatctcacccc |
48986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 28040 - 28099
Alignment:
| Q |
35 |
tcctccaacaatttcctctggtcacggcattcatggctgcaaaatgccatctcacccctg |
94 |
Q |
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| T |
28040 |
tcctccaacagtttcctctggttacgacattcaaggttgcaaaatgccatctcacgcctg |
28099 |
T |
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