View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_223 (Length: 244)
Name: NF6872A_low_223
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_223 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 5376043 - 5376228
Alignment:
| Q |
21 |
gtttaatgccaatctttcaaatgttgcaggaccaataactaatattcttgttcttagacaagaaaatgactcgatgaatcccatgtcttctagtttacaa |
120 |
Q |
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| T |
5376043 |
gtttaatgccaatctttcaaatgttgcaggaccaataactaatattcttgttcttagacaagaaaatgactcgagtaatcccatgtcttctagtttacaa |
5376142 |
T |
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| Q |
121 |
ggaacctcaaaaaagaa-ggagcccaat---ttcctcctctggataaaacgactattgtcagtcttggtggtggcaatatatgcatg |
203 |
Q |
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| T |
5376143 |
ggaacctcaaaaaagaagggagcccaatagatgaagactc-ggataaaacgactattgtcagtcttggtggtggcaatatatgcatg |
5376228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 5368591 - 5368451
Alignment:
| Q |
21 |
gtttaatgccaatctttcaaatgttgcaggaccaataactaatattcttgttcttagacaagaaaatgactcgatgaatcccatgtcttctagtttacaa |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| ||||||| |
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| T |
5368591 |
gtttaatgccaatctttcaaatgttgcaggaccaataactaatattcttgttcttagacaagaaaatgacttgagtaatcccatgtcctctaatttacaa |
5368492 |
T |
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| Q |
121 |
ggaacctcaaaaaagaa-ggagcccaatttcctcctctgga |
160 |
Q |
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| T |
5368491 |
ggaacctcaaaaaagaagggagctcaatttcctcctctgga |
5368451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 5368419 - 5368334
Alignment:
| Q |
159 |
gataaaacgactattgtcagtcttggtggtggcaatatatgcatggatgtttcataccttagttctcaactcatttctagttacag |
244 |
Q |
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| T |
5368419 |
gataaaacgactattgtcagtcttggtggtggcaatatatgcatggatgtttcataccttagttctcaagtgatttctagttacag |
5368334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 5403591 - 5403643
Alignment:
| Q |
40 |
aatgttgcaggaccaataactaatattcttgttcttagacaagaaaatgactc |
92 |
Q |
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| T |
5403591 |
aatgttgcaggacgaataactaatgttttcgttcttagacaagaaagtgactc |
5403643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 12766353 - 12766398
Alignment:
| Q |
45 |
tgcaggaccaataactaatattcttgttcttagacaagaaaatgac |
90 |
Q |
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| T |
12766353 |
tgcaggacctataactaatattattgttgttagacaagaaattgac |
12766398 |
T |
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