View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_224 (Length: 244)
Name: NF6872A_low_224
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_224 |
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| [»] scaffold0110 (3 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 13269 - 13061
Alignment:
| Q |
17 |
aatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttccaggggcaaaaaagccag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13269 |
aatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttccaggggcaaaaaagccag |
13170 |
T |
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| Q |
117 |
tatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaaatctgcataatccgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13169 |
tatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaaatctgcataatccgc |
13070 |
T |
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| Q |
217 |
aaaatcttt |
225 |
Q |
| |
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||||||||| |
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| T |
13069 |
aaaatcttt |
13061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 21006 - 20798
Alignment:
| Q |
17 |
aatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttccaggggcaaaaaagccag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21006 |
aatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttccaggggcaaaaaagccag |
20907 |
T |
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| Q |
117 |
tatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaaatctgcataatccgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20906 |
tatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaaatctgcataatccgc |
20807 |
T |
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| Q |
217 |
aaaatcttt |
225 |
Q |
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||||||||| |
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| T |
20806 |
aaaatcttt |
20798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 30126 - 29918
Alignment:
| Q |
17 |
aatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttccaggggcaaaaaagccag |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30126 |
aatatcaaattgtgagctacagtataaggctcagttcctgaatttccagctgtacaatttccatattcttttgaacatcttccaggggcaaaaaagccat |
30027 |
T |
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| Q |
117 |
tatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaaatctgcataatccgc |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
30026 |
tatcataaccaagtgcagcaacaactcttggttcattgaaggtcatccaattcttaactctgtctccaaatgtcttaaaacaaaaatctgcataatccgc |
29927 |
T |
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| Q |
217 |
aaaatcttt |
225 |
Q |
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||||||||| |
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| T |
29926 |
aaaatcttt |
29918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 31639108 - 31639059
Alignment:
| Q |
146 |
ggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaa |
195 |
Q |
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||||||||||| || ||||||| |||||||||||||||||| | |||||| |
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| T |
31639108 |
ggttcattgaaggtaatccagtgcttaactctgtctccaaaagctttgaa |
31639059 |
T |
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