View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_227 (Length: 243)
Name: NF6872A_low_227
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_227 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 24125294 - 24125520
Alignment:
| Q |
1 |
aaagtgaacactctcaggtggggttgacaaaaactaggtccttgtttccagagatagtctgacctagactcaccccccatcgccctactctattagctcc |
100 |
Q |
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| T |
24125294 |
aaagtgaacactcccgggtggggttgacaaaaactaggtccttgtttccagggatagtctgacctagactcaccccccatcgccctactctattagctcc |
24125393 |
T |
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| Q |
101 |
aatataaaatcaaggccaatttccactcgtaataggtacatgatgtatgannnnnnncttcaacggaaccattttcagaaagaaaaacaagtggaaagtt |
200 |
Q |
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| T |
24125394 |
aatataaaatcaaggccaatttccactcataataggtacatgatgtatgatttttttcttcaacggaaccattttcagaaagaaaaacaagtggaaagtt |
24125493 |
T |
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| Q |
201 |
gattccacatgtgtcccatagagagca |
227 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
24125494 |
gattccacatgtgtcctatagagagca |
24125520 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 45163287 - 45163235
Alignment:
| Q |
165 |
ggaaccattttcagaaagaaaaacaagtggaaagttgattccacatgtgtccca |
218 |
Q |
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| T |
45163287 |
ggaaccattttcagaaagaagaacaagtggaaagttgatt-cacatgtgtccca |
45163235 |
T |
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