View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_23 (Length: 431)
Name: NF6872A_low_23
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 135 - 288
Target Start/End: Original strand, 5898103 - 5898256
Alignment:
| Q |
135 |
atattgtacattaatttcattgcaaatcttcaataaaattgtatgagattgtatatcccctaatctaactttaaccttcaaagacaaatgcaaattgaaa |
234 |
Q |
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| T |
5898103 |
atattgtacattaatttcattgcaaatcttcaataaaattgtataagattgtatatcccctaatctaactttaatcttcaaagacaaatgccaattgcaa |
5898202 |
T |
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| Q |
235 |
attctgaattcataaattgattccttgcatgtcttaagtctttccttcatctca |
288 |
Q |
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| T |
5898203 |
attctgaattcataaattgattccttgcatgtcttaagtctttccttcatctca |
5898256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 135 - 284
Target Start/End: Original strand, 5859909 - 5860056
Alignment:
| Q |
135 |
atattgtacattaatttcattgcaaatcttcaataaaattgtatgagattgtatatcccctaatctaactttaaccttcaaagacaaatgcaaattgaaa |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || || | |
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| T |
5859909 |
atattgtacattaatttcattgcaaatcttcaataaaattgtatgagattgtacatcccctcatctaactttaaccttcaaagacaaatgccaagtgcga |
5860008 |
T |
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| Q |
235 |
attctgaattcataaattgattccttgcatgtcttaagtctttccttcat |
284 |
Q |
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| T |
5860009 |
attctaaattcataagttgattccttgcatg--tttagtctttccttcat |
5860056 |
T |
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