View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6872A_low_234 (Length: 243)

Name: NF6872A_low_234
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6872A_low_234
NF6872A_low_234
[»] chr2 (15 HSPs)
chr2 (19-231)||(8579553-8579765)
chr2 (19-234)||(9061204-9061419)
chr2 (139-234)||(17566146-17566241)
chr2 (20-89)||(9364511-9364580)
chr2 (110-234)||(10347740-10347864)
chr2 (19-89)||(7115835-7115905)
chr2 (192-234)||(7611976-7612018)
chr2 (19-89)||(9284380-9284450)
chr2 (192-234)||(9364665-9364707)
chr2 (111-168)||(9291899-9291956)
chr2 (19-88)||(10335738-10335807)
chr2 (18-80)||(8573725-8573787)
chr2 (192-234)||(9065656-9065698)
chr2 (192-234)||(12018951-12018993)
chr2 (19-80)||(9291804-9291865)
[»] chr3 (2 HSPs)
chr3 (19-234)||(39427495-39427722)
chr3 (109-234)||(37462443-37462568)
[»] chr4 (3 HSPs)
chr4 (107-234)||(561174-561301)
chr4 (20-85)||(561066-561131)
chr4 (194-234)||(26574900-26574940)
[»] chr5 (2 HSPs)
chr5 (107-234)||(36224364-36224497)
chr5 (32-88)||(36224295-36224351)
[»] chr1 (6 HSPs)
chr1 (19-81)||(29423147-29423209)
chr1 (19-89)||(29453494-29453564)
chr1 (107-234)||(29443384-29443511)
chr1 (19-81)||(29467978-29468040)
chr1 (22-81)||(29443519-29443578)
chr1 (107-234)||(29453367-29453494)
[»] chr7 (4 HSPs)
chr7 (112-234)||(45237907-45238029)
chr7 (22-80)||(45243555-45243613)
chr7 (22-80)||(45230293-45230351)
chr7 (112-234)||(45243656-45243778)
[»] chr8 (1 HSPs)
chr8 (19-76)||(41966911-41966968)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 8579765 - 8579553
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatctctatagagatcaccttttacttccaacag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8579765 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatctctatagagattaccttttacttccaacag 8579666  T
Q  119 aaatttacttctatcgctagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacaccaactatct 218  Q
    || |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8579665 aactttacttctatcactagaataacacaaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacaccaactatct 8579566  T
Q  219 ctaaatccatatt 231  Q
    |||||||||||||    
T  8579565 ctaaatccatatt 8579553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 9061419 - 9061204
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatctctatagagatcaccttttacttccaacag 118  Q
    ||||||||||||||| |||| || |||||| |||||| |||||||||||||||||||||||| ||  |  | |||  |  | |   ||| ||||||||||    
T  9061419 aattaggaattccttcaacataactaacttgttcactcttgagatcataccaaaacagcttcctaagagttttatccaagttaggatttgcttccaacag 9061320  T
Q  119 aaatttacttctatcgctagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacaccaactatct 218  Q
    ||  |||| || ||| |||||||||||||| ||| ||||| |   |||||||  |||||| ||||| |   | |||||||| | ||||||||||||||||    
T  9061319 aaccttacctccatcactagaataacataacggcctcaaaaagtccaaaggtgaattgaaacacgatttaaccaaagtaaaaagtttacaccaactatct 9061220  T
Q  219 ctaaatccatattctt 234  Q
    ||| ||||||| ||||    
T  9061219 ctagatccatagtctt 9061204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 17566241 - 17566146
Alignment:
Q  139 aataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacaccaactatctctaaatccatattctt 234  Q
    |||||||||||||||||||| || |||||||| || |||| | | | ||  | || |||||||||||||||||| |||||||||||||||||||||    
T  17566241 aataacataaaggcttcaaatatatcaaaggtatactgaaacgccactcgcccaaggtaaacaatttacaccaattatctctaaatccatattctt 17566146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 9364511 - 9364580
Alignment:
Q  20 attaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 89  Q
    ||||||||||||| |||||| |||||| | |||||| |||||||| ||||||||||||||||||| ||||    
T  9364511 attaggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaaacagcttcttacgatct 9364580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 10347740 - 10347864
Alignment:
Q  110 ttccaacagaaatttacttctatcgctagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacac 209  Q
    |||||||||||  ||||||| ||| |||||||||||||  ||| ||||  || ||||||||  || ||| ||||| ||  | | |||||| | |||||||    
T  10347740 ttccaacagaaccttacttccatcactagaataacatatgggcctcaacaatttcaaaggtaaatcgaaacacgactcagccatagtaaaaagtttacac 10347839  T
Q  210 caactatctctaaatccatattctt 234  Q
    |||||||||||| ||||||||||||    
T  10347840 caactatctctacatccatattctt 10347864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 7115905 - 7115835
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 89  Q
    ||||||||||||||| ||||||| |||||| ||| || || | ||||||||||| ||||||| ||||||||    
T  7115905 aattaggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaaccagcttcctacaatct 7115835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 7611976 - 7612018
Alignment:
Q  192 aaagtaaacaatttacaccaactatctctaaatccatattctt 234  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
T  7611976 aaagtaaacaatttacaccaactatcttttaatccatattctt 7612018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 9284450 - 9284380
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 89  Q
    ||||||||||||||| |||| || ||||||  ||||| || | ||||||||||| ||||||||||||||||    
T  9284450 aattaggaattccttcaacataaataacttgctcactcttcaaatcataccaaaccagcttcttacaatct 9284380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 9364665 - 9364707
Alignment:
Q  192 aaagtaaacaatttacaccaactatctctaaatccatattctt 234  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
T  9364665 aaagtaaacaatttacaccaactatcttttaatccatattctt 9364707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 9291899 - 9291956
Alignment:
Q  111 tccaacagaaatttacttctatcgctagaataacataaaggcttcaaagatctcaaag 168  Q
    ||||||||||  ||||||| ||| |||||||||||||||||| |||||||| ||||||    
T  9291899 tccaacagaaccttacttccatccctagaataacataaaggcctcaaagatttcaaag 9291956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 10335738 - 10335807
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatc 88  Q
    ||||||||||||||| |||| || ||| || |||||| || | |||||||||||||| ||||||||||||    
T  10335738 aattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacaacttcttacaatc 10335807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 8573787 - 8573725
Alignment:
Q  18 caattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 80  Q
    |||||||||||||||| |||| || | |||| |||||| || | |||||||||||||||||||    
T  8573787 caattaggaattccttcaacataactgacttgttcactcttcaaatcataccaaaacagcttc 8573725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 9065698 - 9065656
Alignment:
Q  192 aaagtaaacaatttacaccaactatctctaaatccatattctt 234  Q
    |||||||| | ||||||||||||||||||| ||||||||||||    
T  9065698 aaagtaaaaagtttacaccaactatctctagatccatattctt 9065656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 12018993 - 12018951
Alignment:
Q  192 aaagtaaacaatttacaccaactatctctaaatccatattctt 234  Q
    |||||||| | ||||||||||||||||||| ||||||||||||    
T  12018993 aaagtaaaaagtttacaccaactatctctacatccatattctt 12018951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 9291804 - 9291865
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 80  Q
    ||||||||||||||| |||| || ||| || |||||| || | |||||||||||||||||||    
T  9291804 aattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttc 9291865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 39427495 - 39427722
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttctt---acaatctctatagagatcacc------ttttac 109  Q
    |||||||||||| | ||||| | |||||||  | ||||||||||| ||||||||||||||||||   |  ||| || | || ||||||      ||||||    
T  39427495 aattaggaattcttggaacataggtaactttataacttttgagataataccaaaacagcttcttcttaggatcactcttgaaatcacccctaaattttac 39427594  T
Q  110 ttccaacagaaatttacttctatcgctagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcc---tcaaaagtaaacaattta 206  Q
    ||||||||||| |||||||||||| || |||||||||||||||||||||||  | ||||||  |||||| ||| | |||    |||||||||||||||||    
T  39427595 ttccaacagaactttacttctatcactggaataacataaaggcttcaaagacattaaaggtgaattgaaacaccattcccctacaaaagtaaacaattta 39427694  T
Q  207 caccaactatctctaaatccatattctt 234  Q
    |||||||||| |||| ||||||||||||    
T  39427695 caccaactatatctatatccatattctt 39427722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 234
Target Start/End: Original strand, 37462443 - 37462568
Alignment:
Q  109 cttccaacagaaatttacttctatcgctagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttaca 208  Q
    ||||||||| ||  ||||||| ||| |||||||||||||||||| |||||||| ||||||||  | |||| ||||| |  || | |||| | | ||||||    
T  37462443 cttccaacaaaaccttacttccatcactagaataacataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttatccacagtacaaagtttaca 37462542  T
Q  209 ccaactatctctaaatccatattctt 234  Q
    ||||||||||||| ||||||||||||    
T  37462543 ccaactatctctagatccatattctt 37462568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 234
Target Start/End: Original strand, 561174 - 561301
Alignment:
Q  107 tacttccaacagaaatttacttctatcgctagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaattta 206  Q
    |||||||||||||| |||||||||||| | |||||||| |||||||||| | | | | |||||| || ||||  ||   ||||| ||||||||||||  |    
T  561174 tacttccaacagaactttacttctatcaccagaataacctaaaggcttccatggtgtaaaaggtctactgaaaaacacttcctccaaagtaaacaataca 561273  T
Q  207 caccaactatctctaaatccatattctt 234  Q
    ||||||||||||||||||||||||||||    
T  561274 caccaactatctctaaatccatattctt 561301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 561066 - 561131
Alignment:
Q  20 attaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttaca 85  Q
    ||||||||||||| ||||||| ||| ||  || ||||||||||||||||||||||| ||| |||||    
T  561066 attaggaattcctggaacacaggtagctcttttacttttgagatcataccaaaacaactttttaca 561131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 26574900 - 26574940
Alignment:
Q  194 agtaaacaatttacaccaactatctctaaatccatattctt 234  Q
    |||||| | ||||||||||||||||||| ||||||||||||    
T  26574900 agtaaaaagtttacaccaactatctctacatccatattctt 26574940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 107 - 234
Target Start/End: Original strand, 36224364 - 36224497
Alignment:
Q  107 tacttccaacagaaatttacttctatcgctagaataacataaaggcttcaaagatctcaa------aggtttattgaagcacgaatcctcaaaagtaaac 200  Q
    |||||||||||||| |||||||||||| || ||||||||| |||||||||||||| ||||      ||||  || |||  || | |||   |||||||||    
T  36224364 tacttccaacagaactttacttctatcactggaataacatgaaggcttcaaagatatcaatttaaaaggtgaatcgaaataccattcccacaaagtaaac 36224463  T
Q  201 aatttacaccaactatctctaaatccatattctt 234  Q
    ||||||||||||||||||||||||||||||||||    
T  36224464 aatttacaccaactatctctaaatccatattctt 36224497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 36224295 - 36224351
Alignment:
Q  32 ttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatc 88  Q
    ||||||||| |||||||| | ||||||||||| ||||||||||  ||||||| ||||    
T  36224295 ttgaacacaggtaacttcataacttttgagataataccaaaactccttcttagaatc 36224351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 29423147 - 29423209
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttct 81  Q
    ||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||    
T  29423147 aattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttct 29423209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 29453564 - 29453494
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 89  Q
    ||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||    
T  29453564 aattaggaattccttcaacacaactaacttgttcactcttgagatcataccaaaacagcttctcacaatct 29453494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 234
Target Start/End: Complemental strand, 29443511 - 29443384
Alignment:
Q  107 tacttccaacagaaatttacttctatcgctagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaattta 206  Q
    ||||| ||||||||   ||||||||||||| ||||||| ||||  | |||||| ||||||||||  | |||| ||||| ||  | |||||||| | ||||    
T  29443511 tacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagttta 29443412  T
Q  207 caccaactatctctaaatccatattctt 234  Q
    ||||| ||||||||| ||||||||||||    
T  29443411 caccagctatctctacatccatattctt 29443384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 29468040 - 29467978
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttct 81  Q
    ||||||||||||||| |||| || |||| | |||||| ||||||||||||||||||| |||||    
T  29468040 aattaggaattccttcaacataattaacatgttcactcttgagatcataccaaaacaacttct 29467978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 29443578 - 29443519
Alignment:
Q  22 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttct 81  Q
    |||||||||||| |||| || ||||   |||||| |||||||||||||||||||||||||    
T  29443578 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttct 29443519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 234
Target Start/End: Complemental strand, 29453494 - 29453367
Alignment:
Q  107 tacttccaacagaaatttacttctatcgctagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaattta 206  Q
    ||||||||||||||   |||||| |||||| ||||||  |||||||  ||||| | ||||||||  | |||| || || ||| | |||||||| | || |    
T  29453494 tacttccaacagaaccatacttccatcgctcgaataagctaaaggccacaaagttttcaaaggtaaaatgaaacatgattccgccaaagtaaaaagttca 29453395  T
Q  207 caccaactatctctaaatccatattctt 234  Q
    ||||| ||||||||| ||||||||||||    
T  29453394 caccagctatctctacatccatattctt 29453367  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 45237907 - 45238029
Alignment:
Q  112 ccaacagaaatttacttctatcgctagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacacca 211  Q
    ||||||||| |||||||| |||||| ||||||||||||||| ||||  || ||| | |   |||||| ||||| ||  | |||||||| | |||||||||    
T  45237907 ccaacagaactttacttcgatcgcttgaataacataaaggcctcaacaatttcagatgaaaattgaaacacgattcaactaaagtaaaaagtttacacca 45238006  T
Q  212 actatctctaaatccatattctt 234  Q
    |||||||||| ||||||||||||    
T  45238007 actatctctagatccatattctt 45238029  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 45243555 - 45243613
Alignment:
Q  22 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 80  Q
    ||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||    
T  45243555 taggaattccttgaacataagtaagttgttcactgttgagatcataccaaaacagcttc 45243613  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 45230293 - 45230351
Alignment:
Q  22 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 80  Q
    |||||||||||||||||  |||||||| |||||| |||| |||||||||||||||||||    
T  45230293 taggaattccttgaacatgagtaacttgttcactcttgaaatcataccaaaacagcttc 45230351  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 45243656 - 45243778
Alignment:
Q  112 ccaacagaaatttacttctatcgctagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacacca 211  Q
    ||||||||| |||||||| ||| || ||||||||||||||| ||||||||  |||| |   |||||| ||||| |   | |||||||| | |||||||||    
T  45243656 ccaacagaactttacttcgatcactcgaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacacca 45243755  T
Q  212 actatctctaaatccatattctt 234  Q
    | |||||||| | ||||||||||    
T  45243756 aatatctctagaaccatattctt 45243778  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 41966968 - 41966911
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacag 76  Q
    ||||||||||||||| |||| |||||| || |||||| || | |||||||||||||||    
T  41966968 aattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 41966911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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