View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6872A_low_236 (Length: 243)
Name: NF6872A_low_236
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_236 |
 | |
|
| [»] chr3 (8 HSPs) |
| |
|
| [»] scaffold0094 (1 HSPs) |
| |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
| [»] scaffold0595 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 15598467 - 15598237
Alignment:
| Q |
14 |
atcagacttttcacatgg-tctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactacc |
112 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15598467 |
atcagacttttcatatgggtcttacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactacc |
15598368 |
T |
|
| Q |
113 |
ccagcaccatccttaaccttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatg |
212 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
15598367 |
ccagcaccatccttacccatggcccctgagacagtggaggagtgccaggaggaattggccgaatcaaaccgcgtaggtactacttggaaaaggaagtatg |
15598268 |
T |
|
| Q |
213 |
atgaagctatgcttcagatggagactatggg |
243 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |
|
|
| T |
15598267 |
atgaagctatgctcaagatggaaactatggg |
15598237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 20437888 - 20438116
Alignment:
| Q |
14 |
atcagacttttcacatgg-tctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactacc |
112 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||| |||||||||| | | | || |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20437888 |
atcagacttttcacaaggatctcacactcaatgggtcattaatagagcttcaagtctagtcctaccctatcacctcccaagatacctatcttcaactacc |
20437987 |
T |
|
| Q |
113 |
ccagcaccatccttaaccttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatg |
212 |
Q |
| |
|
||||||||||||||| ||||||| ||||| || |||| |||||||| ||||||||||||||||||| | |||||||| | | ||||||||| ||||||| |
|
|
| T |
20437988 |
ccagcaccatccttacccttggctcctgaaacggtgggagagtgccaagaggaattggccgagtcaagctgtgtaggtgccatttggaaaagaaagtatg |
20438087 |
T |
|
| Q |
213 |
atgaagctatgcttcagatggagactatg |
241 |
Q |
| |
|
|||| |||||||| ||||||| |||||| |
|
|
| T |
20438088 |
atgaggctatgctcaagatggaaactatg |
20438116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 41435053 - 41435281
Alignment:
| Q |
14 |
atcagacttttcacatgg-tctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactacc |
112 |
Q |
| |
|
|||||| |||||||| || ||||||||||||||||||||| |||||||||| | | |||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41435053 |
atcagatttttcacaaggatctcacactcaatgggtcattaatagagcttcaagtctggtcctaccctatcacctcccaagatacctatcttcaactacc |
41435152 |
T |
|
| Q |
113 |
ccagcaccatccttaaccttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatg |
212 |
Q |
| |
|
|||| |||||||||| ||||||| ||||| || |||| |||||||| ||||||||||||||||||| | |||||||| | | ||||||||| ||||||| |
|
|
| T |
41435153 |
ccagtaccatccttacccttggctcctgaaacggtgggagagtgccaagaggaattggccgagtcaagctgtgtaggtgccatttggaaaagaaagtatg |
41435252 |
T |
|
| Q |
213 |
atgaagctatgcttcagatggagactatg |
241 |
Q |
| |
|
|||| |||||||| ||||||| |||||| |
|
|
| T |
41435253 |
atgaggctatgctcaagatggaaactatg |
41435281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 3678881 - 3678983
Alignment:
| Q |
14 |
atcagacttttcacatgg-tctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactacc |
112 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||| |||||||||| | | |||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3678881 |
atcagacttttcacaaggatctcacactcaatgggtcattaatagagcttcaagtctggtcctaccctatcacctcccaagatacctatcttcaactacc |
3678980 |
T |
|
| Q |
113 |
cca |
115 |
Q |
| |
|
||| |
|
|
| T |
3678981 |
cca |
3678983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 30015459 - 30015561
Alignment:
| Q |
14 |
atcagacttttcacatgg-tctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactacc |
112 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||| |||||||||| | | |||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30015459 |
atcagacttttcacaaggatctcacactcaatgggtcattaatagagcttcaagtctggtcctaccctatcacctcccaagatacctatcttcaactacc |
30015558 |
T |
|
| Q |
113 |
cca |
115 |
Q |
| |
|
||| |
|
|
| T |
30015559 |
cca |
30015561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 5956341 - 5956130
Alignment:
| Q |
30 |
ggtctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactaccccagcaccatccttaac |
129 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| || |||| |||| ||||| |||| || |||||||||||||| |||||||| || | ||| | |
|
|
| T |
5956341 |
ggtcttacactcaatgggtcatcaatagagcttccgatctggtcttaccatatcatttgccgaggtacctatcttcaacaaccccagcgccggctttacc |
5956242 |
T |
|
| Q |
130 |
cttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatgatgaagctatgcttcag |
229 |
Q |
| |
|
||||||||| | || |||||||| || || ||| | |||||| || | |||| ||| |||| ||||||||||||||||||||||||||||| || |
|
|
| T |
5956241 |
cttggcccccgcaactgtggaggaatgtcaagagaagttggcccgatcggaatgtgtgggtgctacctggaaaaggaagtatgatgaagctatgctcaag |
5956142 |
T |
|
| Q |
230 |
atggagactatg |
241 |
Q |
| |
|
||||| |||||| |
|
|
| T |
5956141 |
atggaaactatg |
5956130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 37262193 - 37261982
Alignment:
| Q |
30 |
ggtctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactaccccagcaccatccttaac |
129 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||||| || |||| |||| ||||| |||| || |||||||||||||| |||||||| || | ||| | |
|
|
| T |
37262193 |
ggtcttacacgcaatgggtcatcaatagagcttccgatctggtcttaccatatcatttgccgaggtacctatcttcaacaaccccagcgccggctttacc |
37262094 |
T |
|
| Q |
130 |
cttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatgatgaagctatgcttcag |
229 |
Q |
| |
|
||||||||| | || |||||||| || || ||| | |||||| || | |||| ||| |||| ||||||||||||||||||||||||||||| || |
|
|
| T |
37262093 |
cttggcccccgcaactgtggaggaatgtcaagagaagttggcccgatcggaatgtgtgggtgctacctggaaaaggaagtatgatgaagctatgctcaag |
37261994 |
T |
|
| Q |
230 |
atggagactatg |
241 |
Q |
| |
|
||||| |||||| |
|
|
| T |
37261993 |
atggaaactatg |
37261982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 225
Target Start/End: Original strand, 46375026 - 46375221
Alignment:
| Q |
30 |
ggtctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactaccccagcaccatccttaac |
129 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| || |||| |||| ||||| |||| || |||||||||||||| |||||||| || | ||| | |
|
|
| T |
46375026 |
ggtcttacactcaatgggtcatcaatagagcttccgatctggtcttaccatatcatttgccgaggtacctatcttcaacaaccccagcgccggctttacc |
46375125 |
T |
|
| Q |
130 |
cttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatgatgaagctatgct |
225 |
Q |
| |
|
||||||||| | || |||||||| || || ||| |||||| | || | |||| ||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
46375126 |
cttggcccccgcaactgtggaggaatgtcaagagaggttggcccaatcggaatgtgtgggtgctacttggaagaggaagtatgatgaagctatgct |
46375221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 40867 - 40637
Alignment:
| Q |
14 |
atcagacttttcacatgg-tctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactacc |
112 |
Q |
| |
|
||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40867 |
atcagacttttcatatgggtcttacactcaatgggtcattgatagagcttccaatttggttctaccctatcaccttccaagatacctatcttcaactacc |
40768 |
T |
|
| Q |
113 |
ccagcaccatccttaaccttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatg |
212 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
40767 |
ccagcaccatccttacccatggcccctgagacagtggaggagtgccaggaggaattggccgaatcaaaccgcgtaggtactacttggaaaaggaagtatg |
40668 |
T |
|
| Q |
213 |
atgaagctatgcttcagatggagactatggg |
243 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |
|
|
| T |
40667 |
atgaagctatgctcaagatggaaactatggg |
40637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 803830 - 803602
Alignment:
| Q |
14 |
atcagacttttcacatgg-tctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactacc |
112 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||| |||||||||| | | |||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
803830 |
atcagacttttcacaaggatctcacactcaatgggtcattaatagagcttcaagtctggtcctaccctatcacctcccaagatacctatcttcaactacc |
803731 |
T |
|
| Q |
113 |
ccagcaccatccttaaccttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatg |
212 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| |||| ||||| || ||||||||||| ||||||||| |||||||| | | ||||||||| ||||||| |
|
|
| T |
803730 |
ccagcaccatccttacccttggctcctgagaccgtgggagagtgtcaagaggaattggctgagtcaaactgtgtaggtgccatttggaaaagaaagtatg |
803631 |
T |
|
| Q |
213 |
atgaagctatgcttcagatggagactatg |
241 |
Q |
| |
|
||||||||||||| ||||||| |||||| |
|
|
| T |
803630 |
atgaagctatgctcaagatggaaactatg |
803602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 16292708 - 16292480
Alignment:
| Q |
14 |
atcagacttttcacatgg-tctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactacc |
112 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||| |||||||||| | | | || |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16292708 |
atcagacttttcacaaggatctcacactcaatgggtcattaatagagcttcaagtctagtcctaccctatcacctcccaagatacctatcttcaactacc |
16292609 |
T |
|
| Q |
113 |
ccagcaccatccttaaccttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatg |
212 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| |||| |||||||| ||||||||||| || |||||| |||||||| | | ||||||||| ||||||| |
|
|
| T |
16292608 |
ccagcaccatccttacccttggctcctgagactgtgggagagtgccaagaggaattggctgaatcaaactgtgtaggtgccatttggaaaagaaagtatg |
16292509 |
T |
|
| Q |
213 |
atgaagctatgcttcagatggagactatg |
241 |
Q |
| |
|
||||||||||||| ||||||| |||||| |
|
|
| T |
16292508 |
atgaagctatgctcaagatggaaactatg |
16292480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 3429576 - 3429474
Alignment:
| Q |
14 |
atcagacttttcacatgg-tctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactacc |
112 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||| |||||||||| | | |||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3429576 |
atcagacttttcacaaggatctcacactcaatgggtcattaatagagcttcaagtctggtcctaccctatcacctcccaagatacctatcttcaactacc |
3429477 |
T |
|
| Q |
113 |
cca |
115 |
Q |
| |
|
||| |
|
|
| T |
3429476 |
cca |
3429474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 16398873 - 16398662
Alignment:
| Q |
30 |
ggtctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactaccccagcaccatccttaac |
129 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| || |||| |||| ||||| ||||||| |||||||||||||| |||||||| || | ||| | |
|
|
| T |
16398873 |
ggtcttacactcaatgggtcatcaatagagcttccgatctggtcttaccatatcatttgccaaggtacctatcttcaacaaccccagctccggctttacc |
16398774 |
T |
|
| Q |
130 |
cttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatgatgaagctatgcttcag |
229 |
Q |
| |
|
||||||||| | || |||||||| || || ||| | |||||| || | |||| ||| |||| ||||||||||||||||||||||||||||| || |
|
|
| T |
16398773 |
cttggcccccgcaactgtggaggaatgtcaagagaagttggcccgatcggaatgtgtgggtgctacctggaaaaggaagtatgatgaagctatgctcaag |
16398674 |
T |
|
| Q |
230 |
atggagactatg |
241 |
Q |
| |
|
|||||||||||| |
|
|
| T |
16398673 |
atggagactatg |
16398662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 9464328 - 9464539
Alignment:
| Q |
30 |
ggtctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactaccccagcaccatccttaac |
129 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| || |||| |||| ||||| ||||||| |||||||||||||| |||||||| || | ||| | |
|
|
| T |
9464328 |
ggtcttacactcaatgggtcatcaatagagcttccgatctggtcttaccatatcatttgccaaggtacctatcttcaacaaccccagctccggctttacc |
9464427 |
T |
|
| Q |
130 |
cttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatgatgaagctatgcttcag |
229 |
Q |
| |
|
||||||||| | || |||||||| || || ||| | |||||| || | ||| ||| |||||||||| ||||||||||||||||||||||| || |
|
|
| T |
9464428 |
cttggcccccgcaactgtggaggaatgtcaagagaagttggcccgatcggaatatgtgggtgctacttggaagaggaagtatgatgaagctatgctcaag |
9464527 |
T |
|
| Q |
230 |
atggagactatg |
241 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9464528 |
atggagactatg |
9464539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 225
Target Start/End: Complemental strand, 30375367 - 30375172
Alignment:
| Q |
30 |
ggtctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactaccccagcaccatccttaac |
129 |
Q |
| |
|
||||| |||| ||||||||| | ||||||||||| || |||| |||| ||||| |||| || |||||||||||||| |||||||| || | ||| | |
|
|
| T |
30375367 |
ggtcttacacgcaatgggtcgtcaatagagcttccgatctggtcttaccatatcatttgccgaggtacctatcttcaacaaccccagctccggctttacc |
30375268 |
T |
|
| Q |
130 |
cttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatgatgaagctatgct |
225 |
Q |
| |
|
||||||||| | || |||||||| || || ||| | |||||| || | |||| || |||| ||||||||||||||||||||||||||||| |
|
|
| T |
30375267 |
cttggcccccgcaactgtggaggaatgtcaagagaagttggcccgatcggaatgtgtgagtgctacctggaaaaggaagtatgatgaagctatgct |
30375172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 34463432 - 34463660
Alignment:
| Q |
14 |
atcagacttttcacatgg-tctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactacc |
112 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||| |||||||||| | | | || |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34463432 |
atcagacttttcacaaggatctcacactcaatgggtcattaatagagcttcaagtctagtcctaccctatcacctcccaagatacctatcttcaactacc |
34463531 |
T |
|
| Q |
113 |
ccagcaccatccttaaccttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatg |
212 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| |||| |||||||| ||||||||||| || |||||| |||||||| | | ||||||||| ||||||| |
|
|
| T |
34463532 |
ccagcaccatccttacccttggctcctgagactgtgggagagtgccaagaggaattggctgaatcaaactgtgtaggtgccatttggaaaagaaagtatg |
34463631 |
T |
|
| Q |
213 |
atgaagctatgcttcagatggagactatg |
241 |
Q |
| |
|
||||||||||||| ||||||| |||||| |
|
|
| T |
34463632 |
atgaagctatgctcaagatggaaactatg |
34463660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 225
Target Start/End: Complemental strand, 11949833 - 11949638
Alignment:
| Q |
30 |
ggtctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactaccccagcaccatccttaac |
129 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| ||||||| ||||||||||| |||| || |||||||||||||| |||||||| || | ||| | |
|
|
| T |
11949833 |
ggtcttacactcaatgggtcatcaatagagcttccgatttggtcctaccctatcatttgccgaggtacctatcttcaacaaccccagcgccggctttacc |
11949734 |
T |
|
| Q |
130 |
cttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatgatgaagctatgct |
225 |
Q |
| |
|
||||||||| | || |||||||| || || ||| | |||||| || | ||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11949733 |
cttggcccccgcaactgtggaggaatgtcaagagaagttggcccgatcggaatatgtgggtgctacttggaaaaggaagtatgatgaagctatgct |
11949638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 17951845 - 17952056
Alignment:
| Q |
30 |
ggtctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactaccccagcaccatccttaac |
129 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| ||||||| |||||||||| |||| || |||||||||||||| |||||||| || | ||| | |
|
|
| T |
17951845 |
ggtcttacactcaatgggtcatcaatagagcttccgatttggtcttaccctatcatttgccgaggtacctatcttcaacaaccccagcgccggctttacc |
17951944 |
T |
|
| Q |
130 |
cttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatgatgaagctatgcttcag |
229 |
Q |
| |
|
||||||||| | || |||||||| || || ||| | |||||| || | |||| ||| |||| ||||||||||||||||||||||||||||| || |
|
|
| T |
17951945 |
cttggcccccgcaactgtggaggaatgtcaagagaagttggcccgatcggaatgtgtgggtgctacctggaaaaggaagtatgatgaagctatgctcaag |
17952044 |
T |
|
| Q |
230 |
atggagactatg |
241 |
Q |
| |
|
||||| |||||| |
|
|
| T |
17952045 |
atggaaactatg |
17952056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 31515050 - 31515261
Alignment:
| Q |
30 |
ggtctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactaccccagcaccatccttaac |
129 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| || |||| |||| ||||| ||||||| |||||||||||||| |||||||| || | ||| | |
|
|
| T |
31515050 |
ggtcttacactcaatgggtcatcaatagagcttccgatctggtcttaccatatcatttgccaaggtacctatcttcaacaaccccagctccggctttacc |
31515149 |
T |
|
| Q |
130 |
cttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatgatgaagctatgcttcag |
229 |
Q |
| |
|
||||||||| | || |||||||| || || ||| | |||||| || | |||| ||| |||| ||||||||||||||||||||||||||||| || |
|
|
| T |
31515150 |
cttggcccccgcaactgtggaggaatgtcaagagaagttggcccgatcggaatgtgtgggtgctacctggaaaaggaagtatgatgaagctatgctcaag |
31515249 |
T |
|
| Q |
230 |
atggagactatg |
241 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31515250 |
atggagactatg |
31515261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 36381398 - 36381187
Alignment:
| Q |
30 |
ggtctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactaccccagcaccatccttaac |
129 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||||||| |||| |||| ||||| |||| || |||||||||||||| |||||||| || | ||| | |
|
|
| T |
36381398 |
ggtcttacactcaatgggtcatcaatagggcttccaatctggtcttaccatatcatttgccgaggtacctatcttcaacaaccccagctccggctttacc |
36381299 |
T |
|
| Q |
130 |
cttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatgatgaagctatgcttcag |
229 |
Q |
| |
|
||||||||| | || |||||||| || || ||| | |||||| | || | | || ||| |||||||||| ||||||||||||||||||||||| || |
|
|
| T |
36381298 |
cttggcccccgcaactgtggaggaatgtcaagagaagttggcccaatcggaatgcgtgggtgctacttggaagaggaagtatgatgaagctatgctcaag |
36381199 |
T |
|
| Q |
230 |
atggagactatg |
241 |
Q |
| |
|
||||| |||||| |
|
|
| T |
36381198 |
atggaaactatg |
36381187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 37006070 - 37005859
Alignment:
| Q |
30 |
ggtctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactaccccagcaccatccttaac |
129 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||||||| |||| |||| ||||| |||| || |||||||||||||| |||||||| || | ||| | |
|
|
| T |
37006070 |
ggtcttacactcaatgggtcatcaatagggcttccaatctggtcttaccatatcatttgccgaggtacctatcttcaacaaccccagctccggctttacc |
37005971 |
T |
|
| Q |
130 |
cttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatgatgaagctatgcttcag |
229 |
Q |
| |
|
||||||||| | || |||||||| || || ||| | |||||| | || | | || ||| |||||||||| ||||||||||||||||||||||| || |
|
|
| T |
37005970 |
cttggcccccgcaactgtggaggaatgtcaagagaagttggcccaatcggaatgcgtgggtgctacttggaagaggaagtatgatgaagctatgctcaag |
37005871 |
T |
|
| Q |
230 |
atggagactatg |
241 |
Q |
| |
|
||||| |||||| |
|
|
| T |
37005870 |
atggaaactatg |
37005859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 225
Target Start/End: Complemental strand, 15790130 - 15789935
Alignment:
| Q |
30 |
ggtctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactaccccagcaccatccttaac |
129 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| || |||| |||| ||||| |||| || |||||||||||||| |||||||| || | ||| | |
|
|
| T |
15790130 |
ggtcttacactcaatgggtcatcaatagagcttccgatctggtcttaccatatcatttgccgaggtacctatcttcaacaaccccagcgccggctttacc |
15790031 |
T |
|
| Q |
130 |
cttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatgatgaagctatgct |
225 |
Q |
| |
|
||||||||| | || |||||||| || || ||| |||||| | || | |||| ||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
15790030 |
cttggcccccgcaactgtggaggaatgtcaagagaggttggcccaatcggaatgtgtgggtgctacttggaagaggaagtatgatgaagctatgct |
15789935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 243
Target Start/End: Complemental strand, 5445621 - 5445408
Alignment:
| Q |
30 |
ggtctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactaccccagcaccatccttaac |
129 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| || |||| |||| ||||| |||| || |||||||||||||| |||||||| || | ||| | |
|
|
| T |
5445621 |
ggtcttacactcaatgggtcatcaatagagcttccgatctggtcttaccatatcatttgccgaggtacctatcttcaacaaccccagcgccggctttacc |
5445522 |
T |
|
| Q |
130 |
cttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatgatgaagctatgcttcag |
229 |
Q |
| |
|
||||||||| | || |||||||| || | ||| | |||||| || | | | ||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
5445521 |
cttggcccccgcaactgtggaggaatgtcgagagaagttggcccgatcggaatatatgggtgctacttggaaaaggaagtatgatgaagctatgctcaag |
5445422 |
T |
|
| Q |
230 |
atggagactatggg |
243 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
5445421 |
atggaaactatggg |
5445408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 5634542 - 5634331
Alignment:
| Q |
30 |
ggtctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactaccccagcaccatccttaac |
129 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| || |||| |||| ||||| ||||||| |||||||||||||| |||||||| || | ||| | |
|
|
| T |
5634542 |
ggtcttacactcaatgggtcattaatagagcttccgatctggtcttaccatatcatttgccaaggtacctatcttcaacaaccccagctccggctttacc |
5634443 |
T |
|
| Q |
130 |
cttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatgatgaagctatgcttcag |
229 |
Q |
| |
|
||||||||| | || |||||||| || || ||| | |||||| || | ||| ||| |||||||||| ||||||||||||||||||||||| || |
|
|
| T |
5634442 |
cttggcccccgcaactgtggaggaatgtcaagagaagttggcccgatcggaatatgtgggtgctacttggaagaggaagtatgatgaagctatgctcaag |
5634343 |
T |
|
| Q |
230 |
atggagactatg |
241 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5634342 |
atggagactatg |
5634331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 9141821 - 9141610
Alignment:
| Q |
30 |
ggtctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactaccccagcaccatccttaac |
129 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| || |||| |||||||||| |||| || |||||||||||||| |||||||| || | ||| | |
|
|
| T |
9141821 |
ggtcttacactcaatgggtcatcaatagagcttccgatctggtcttaccctatcatttgccgaggtacctatcttcaacaaccccagcgccggctttacc |
9141722 |
T |
|
| Q |
130 |
cttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatgatgaagctatgcttcag |
229 |
Q |
| |
|
||||||||| | || |||||||| || || ||| | |||||| || | |||| ||| |||| ||||||||||||||||||||||||||||| || |
|
|
| T |
9141721 |
cttggcccccgcaactgtggaggaatgtcaagagaagttggcccgatcggaatgtgtgggtgctacctggaaaaggaagtatgatgaagctatgctcaag |
9141622 |
T |
|
| Q |
230 |
atggagactatg |
241 |
Q |
| |
|
||||| |||||| |
|
|
| T |
9141621 |
atggaaactatg |
9141610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 12378404 - 12378615
Alignment:
| Q |
30 |
ggtctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactaccccagcaccatccttaac |
129 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| || |||| |||| ||||| ||||||| |||||||||||||| |||||||| || | ||| | |
|
|
| T |
12378404 |
ggtcttacactcaatgggtcatcaatagagcttccgatctggtcttaccatatcatttgccaaggtacctatcttcaacaaccccagctccggctttacc |
12378503 |
T |
|
| Q |
130 |
cttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatgatgaagctatgcttcag |
229 |
Q |
| |
|
||||||||| | || |||||||| || || ||| | |||||| || | ||| ||| |||||||||| ||||| ||||||||||||||||| || |
|
|
| T |
12378504 |
cttggcccccgcaactgtggaggaatgtcaagagaagttggcccgatcggaatatgtgggtgctacttggaagaggaaatatgatgaagctatgctcaag |
12378603 |
T |
|
| Q |
230 |
atggagactatg |
241 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12378604 |
atggagactatg |
12378615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 22944131 - 22944342
Alignment:
| Q |
30 |
ggtctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactaccccagcaccatccttaac |
129 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| || |||| |||| ||||| |||| || |||||||||||||| |||||||| || | ||| | |
|
|
| T |
22944131 |
ggtcttacactcaatgggtcatcaatagagcttccgatctggtcttaccatatcatttgccgaggtacctatcttcaacaaccccagcgccggctttacc |
22944230 |
T |
|
| Q |
130 |
cttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatgatgaagctatgcttcag |
229 |
Q |
| |
|
||||||||| | || |||||||| || || ||| | |||||| ||| | ||| ||| ||||||||||||||| |||||||||||||||||| || |
|
|
| T |
22944231 |
cttggcccccgcaactgtggaggaatgtcaagagaagttggcccgatcagaatatgtgggtgctacttggaaaaggaggtatgatgaagctatgctcaag |
22944330 |
T |
|
| Q |
230 |
atggagactatg |
241 |
Q |
| |
|
||||| |||||| |
|
|
| T |
22944331 |
atggaaactatg |
22944342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 23929 - 24140
Alignment:
| Q |
30 |
ggtctcacactcaatgggtcattgatagagcttccaatttggttctaccctatcacctgccaagatacctatcttcaactaccccagcaccatccttaac |
129 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||||| || |||| || | ||||| |||| || |||||||||||||| |||||||| || | ||| | |
|
|
| T |
23929 |
ggtcttacacgcaatgggtcatcaatagagcttccgatctggtcttatcatatcatttgccgaggtacctatcttcaacaaccccagcgccggctttacc |
24028 |
T |
|
| Q |
130 |
cttggcccctgagacagtggaggagtgccaggaggaattggccgagtcaaaccgtgtaggttctacttggaaaaggaagtatgatgaagctatgcttcag |
229 |
Q |
| |
|
||||||||| | || |||||||| || || ||| | |||||| || | |||| ||| |||| |||||||||||||||||||||| |||||| || |
|
|
| T |
24029 |
cttggcccccgcaactgtggaggaatgtcaagagaagttggcccgatcggaatgtgtgggtgctacctggaaaaggaagtatgatgaagttatgctcaag |
24128 |
T |
|
| Q |
230 |
atggagactatg |
241 |
Q |
| |
|
||||| |||||| |
|
|
| T |
24129 |
atggaaactatg |
24140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0595 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0595
Description:
Target: scaffold0595; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 7860 - 7918
Alignment:
| Q |
183 |
gtgtaggttctacttggaaaaggaagtatgatgaagctatgcttcagatggagactatg |
241 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
7860 |
gtgtgggtgctacttggaagaggaagtatgatgaagctatgctcaagatggaaactatg |
7918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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