View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_254 (Length: 236)
Name: NF6872A_low_254
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_254 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 22015137 - 22015358
Alignment:
| Q |
15 |
gacatcaacatggtaagatagctctatcatgaagataaataatccagtaaaacgaaaccgtctgataagcacagatcgaactattcttttgccttttact |
114 |
Q |
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| T |
22015137 |
gacatcaacatggtaagatagctctatcatgaagataaacaatccagtaaaacgaaaccgtctgataagcacagatcgaactattcttttgccttttact |
22015236 |
T |
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| Q |
115 |
nnnnnnngaaagatgataatccagaaaaacattaactgaataaaactatgtggatagctaaaaggaaaaaacatacaattggatcaggtgcattagcctg |
214 |
Q |
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| T |
22015237 |
aaaaaaagaaagatgataatccagaaaaacattaactgaataaaactatgtggatagctaaaaggaaaaaacatacaattggatcaggtgcattagcctg |
22015336 |
T |
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| Q |
215 |
ctggcacataatccagggaaca |
236 |
Q |
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|||||||||||||||||||||| |
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| T |
22015337 |
ctggcacataatccagggaaca |
22015358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 49588253 - 49588209
Alignment:
| Q |
70 |
aaccgtctgataagcacagatcgaactattcttttgccttttact |
114 |
Q |
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| T |
49588253 |
aaccgtgtgataagcacaaagcgaactattctttcgccttttact |
49588209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 33891597 - 33891641
Alignment:
| Q |
70 |
aaccgtctgataagcacagatcgaactattcttttgccttttact |
114 |
Q |
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| T |
33891597 |
aaccgtgtgataagcacatagcgaactattctttcgccttttact |
33891641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 5900530 - 5900574
Alignment:
| Q |
70 |
aaccgtctgataagcacagatcgaactattcttttgccttttact |
114 |
Q |
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|||||| ||||||||||| | ||||||||||||| |||||||||| |
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| T |
5900530 |
aaccgtgtgataagcacaaagcgaactattctttcgccttttact |
5900574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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