View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_255 (Length: 236)
Name: NF6872A_low_255
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_255 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 9370248 - 9370475
Alignment:
| Q |
7 |
tgagatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggt |
106 |
Q |
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| T |
9370248 |
tgagatgactgggttgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggt |
9370347 |
T |
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| Q |
107 |
ggcttgacaaggacgagagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtctt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9370348 |
ggcttgacaaggacgagagtgcgtttggagaggtaacataatggtgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtttc |
9370447 |
T |
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| Q |
207 |
cggaatcatgtacgagtgggcatttgat |
234 |
Q |
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| T |
9370448 |
cggaatcatatacgagtgggaatttgat |
9370475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 9348594 - 9348813
Alignment:
| Q |
7 |
tgagatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggt |
106 |
Q |
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| T |
9348594 |
tgagatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgatgaattggggtttttccatgttgtggt |
9348693 |
T |
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| Q |
107 |
ggcttgacaaggacgagagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtctt |
206 |
Q |
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| T |
9348694 |
ggcctgacaaggacgagagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgagagatggtagtttc |
9348793 |
T |
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| Q |
207 |
cggaatcatgtacgagtggg |
226 |
Q |
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| T |
9348794 |
tggaatcatgtacgagtggg |
9348813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 9341314 - 9341396
Alignment:
| Q |
10 |
gatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggttt |
92 |
Q |
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| T |
9341314 |
gatgagtgggtgaaagagtttggttttgccatgtgagttttgagtaaatctaatcaaccaaggacgacgaggaattagggttt |
9341396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 9407962 - 9408006
Alignment:
| Q |
32 |
gtttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
76 |
Q |
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| T |
9407962 |
gttttgccatgtgagttttgggtaactctaatcaaccaaggacga |
9408006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 9426170 - 9426213
Alignment:
| Q |
33 |
tttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
76 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
9426170 |
ttttgccatgtgagttttgggtaactctaatcaaccaaggacga |
9426213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 9441300 - 9441257
Alignment:
| Q |
33 |
tttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
76 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
9441300 |
ttttgccatgtgagttttgggtaactctaatcaaccaaggacga |
9441257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 9417167 - 9417210
Alignment:
| Q |
33 |
tttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
76 |
Q |
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| T |
9417167 |
ttttgccatgtgagttttgggtaactctgatcaaccaaggacga |
9417210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 9353538 - 9353587
Alignment:
| Q |
43 |
tgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggttt |
92 |
Q |
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||||||||| |||| || ||||||||||| ||||||||||||||||||| |
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| T |
9353538 |
tgagttttgggtaattcgtatcaaccaaggccgacgacgaattagggttt |
9353587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 250861 - 250825
Alignment:
| Q |
43 |
tgagttttgtgtaactctaatcaaccaaggacgacga |
79 |
Q |
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| T |
250861 |
tgagttttgtgtaattctaaacaaccaaggacgacga |
250825 |
T |
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