View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_26 (Length: 426)
Name: NF6872A_low_26
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 23 - 419
Target Start/End: Complemental strand, 33992689 - 33992299
Alignment:
| Q |
23 |
actaccatgataccaaatgttgaaaacctattgaatatggcaggacctgctactatccacagcttcttgctttcttcccatacccttttccttagtgact |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33992689 |
actaccatgataccaaatgttgaaaacctattgaatatggcaggacctgctactatccacagcttcttgctttcttcccatacccttttccttagggact |
33992590 |
T |
|
| Q |
123 |
cttcatcctcctctgaagggttttgatgctgcaaaaggttcttgtttagctcttctgatcccatttccacttcttctactatggagctgcaagttgttta |
222 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33992589 |
cttcatcctcctctgaagggttttgatgctgtaaaaggttcttgtttagctcttctgatcccatttccacttcttctactatggagctgcaagttgttta |
33992490 |
T |
|
| Q |
223 |
aatatttttcatgaaatgtaatcatatgttgcactatatgtcatataaatataaatataaataattaaactattgaaaataggagacctcatttaaacct |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33992489 |
aatatttttcatgaaatgtaatcatatgttgcactatatgtcatataaatata------aataattaaactattgaaaataggagacctcatttaaacct |
33992396 |
T |
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| Q |
323 |
tgattaatatacatgtaaaaataaactggactgatgaatgacataaaatatatgcttacacttatgttcgtgatgttctcctgaattatattcttcg |
419 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33992395 |
tgattaatatacatgtaaaaaaaaactggactgatgaatgacataaaatatatgcttacacttatgttcgtgatgttctcctgaattatatttttcg |
33992299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 33982931 - 33982754
Alignment:
| Q |
23 |
actaccatgataccaaatgttgaaaacctattgaatatggcaggacctgctactatccacagcttcttgctttcttcccatacccttttccttagtgact |
122 |
Q |
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|||| ||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| |||||||||||||| |||||| ||||||||||||| || |
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| T |
33982931 |
actatcatgataccaaatgttgaaaacctagtgaacatggcagggcctgctactatccacaacttcttgctttctttccatactcttttccttagtggct |
33982832 |
T |
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| Q |
123 |
cttcatcctcctctgaagggttttgatgctgcaaaaggttcttgtttagctcttctgatcccatttccacttcttcta |
200 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33982831 |
cttcttcctcctctgaagtattttgatgctgcaaaaggttcttgtttagctcttctgatcccatttccacttcttcta |
33982754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 9219437 - 9219525
Alignment:
| Q |
37 |
aaatgttgaaaacctattgaatatggcaggacctgctactatccacagcttcttgctttcttcccatacccttttccttagtgactctt |
125 |
Q |
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|||||||||||| | ||||||| ||||| ||||| |||| ||| | |||||||||||||||||||||||||||||||||||| |||| |
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| T |
9219437 |
aaatgttgaaaattttgtgaatattgcaggccctgccactacccaaatcttcttgctttcttcccatacccttttccttagtgattctt |
9219525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 9240524 - 9240596
Alignment:
| Q |
54 |
tgaatatggcaggacctgctactatccacagcttcttgctttcttcccatacccttttccttagtgactcttc |
126 |
Q |
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||||||| ||||| ||||||||| |||| | ||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
9240524 |
tgaatattgcaggccctgctactctccaaatcttcttgctttcttcccataccctttttcttagtgattcttc |
9240596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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