View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_263 (Length: 234)
Name: NF6872A_low_263
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_263 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 31700744 - 31700972
Alignment:
| Q |
1 |
gaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggta |
100 |
Q |
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| T |
31700744 |
gaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggta |
31700843 |
T |
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| Q |
101 |
cttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccact |
200 |
Q |
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| T |
31700844 |
cttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactattgtgaccact |
31700943 |
T |
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| Q |
201 |
atggtctat-tggagtcaatggatactgc |
228 |
Q |
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| T |
31700944 |
atggtctatgtggagtcaatggatactgc |
31700972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 33 - 224
Target Start/End: Original strand, 31723329 - 31723521
Alignment:
| Q |
33 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggtacttaaccaaaccagttatgaacgtccacgcta |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| | || |||||||| || |
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| T |
31723329 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagtactcaaatatcaaaagtggtacttaaccaaaccagtaacgatcgtccacgata |
31723428 |
T |
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| Q |
133 |
catatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccactatggtctat-tggagtcaatggata |
224 |
Q |
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| T |
31723429 |
cgtatggtcaaaggacgacaaatcatggaatatttattcaagaataccaggagacgattgtgaccattatggtcgatgtggagtcaatggata |
31723521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 33 - 224
Target Start/End: Original strand, 31716084 - 31716276
Alignment:
| Q |
33 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggtacttaaccaaaccagttatgaacgtccacgcta |
132 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||| | || ||||||||||| |
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| T |
31716084 |
tctggaataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggtacttaaccaaaccagtaaagatcgtccacgcta |
31716183 |
T |
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| Q |
133 |
catatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccactatggtctat-tggagtcaatggata |
224 |
Q |
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| T |
31716184 |
cgtatggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccattatggtcaatgtggagtcaatggata |
31716276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 33 - 224
Target Start/End: Original strand, 31721958 - 31722150
Alignment:
| Q |
33 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggtacttaaccaaaccagttatgaacgtccacgcta |
132 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||| | || ||||||||||| |
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| T |
31721958 |
tctggaataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggtacttaaccaaaccagtaaagatcgtccacgcta |
31722057 |
T |
|
| Q |
133 |
catatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccactatggtctat-tggagtcaatggata |
224 |
Q |
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| ||||||||||||||| ||||| ||||| | ||||||||| |||||| | |||| | ||||||| ||||||| || ||||||||||||||| |
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| T |
31722058 |
cgtatggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccattatggtcaatgtggagtcaatggata |
31722150 |
T |
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